Construct: ORF ccsbBroadEn_08408

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007354.1_s300c1, BRDN0000393605
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIM44 (54765)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54765 TRIM44 tripartite motif containing 44 NM_017583.6 99.9% 100% 879T>G
2 human 54765 TRIM44 tripartite motif containing 44 XM_006718254.1 76.7% 76.7% 747_748ins240
3 mouse 80985 Trim44 tripartite motif-containing 44 NM_020267.2 88.1% 91.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1098
ORF length:
1032
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CTCTGGAGTG GGCGCGGCCT TCGAGGAACT GCCTCACGAC GGCACGTGTG
121ACGAGTGCGA GCCCGACGAG GCTCCGGGGG CCGAGGAAGT GTGCCGAGAA TGCGGCTTCT
181GCTACTGCCG CCGCCATGCC GAGGCGCACA GGCAGAAGTT CCTCAGTCAC CATCTGGCCG
241AATACGTCCA CGGCTCCCAG GCCTGGACCC CGCCAGCTGA CGGAGAGGGG GCGGGGAAGG
301AAGAAGCGGA GGTCAAGGTG GAGCAGGAGA GGGAGATAGA AAGCGAGGCA GGGGAAGAGA
361GTGAGTCGGA GGAAGAGAGC GAGTCAGAGG AAGAGAGCGA GACAGAGGAA GAGAGTGAGG
421ATGAGAGCGA TGAGGAGAGT GAAGAAGACA GCGAGGAAGA AATGGAGGAT GAGCAAGAAA
481GCGAGGCCGA AGAAGACAAC CAAGAAGAAG GGGAATCCGA GGCGGAGGGA GAAACTGAGG
541CAGAAAGTGA ATTTGACCCA GAAATAGAAA TGGAAGCAGA GAGAGTGGCC AAGAGGAAGT
601GTCCGGACCA TGGGCTTGAT TTGAGTACCT ATTGCCAGGA AGATAGGCAG CTCATCTGTG
661TCCTGTGTCC AGTCATTGGG GCTCACCAGG GCCACCAACT CTCCACCCTA GACGAAGCCT
721TTGAAGAATT AAGAAGCAAA GACTCAGGTG GACTGAAGGC CGCTATGATC GAATTGGTGG
781AAAGGTTGAA GTTCAAGAGC TCAGACCCTA AAGTAACTCG GGACCAAATG AAGATGTTTA
841TACAGCAGGA ATTTAAGAAA GTTCAGAAAG TGATTGCTGA TGAGGAGCAG AAGGCCCTTC
901ATCTAGTGGA CATCCAAGAG GCAATGGCCA CAGCTCATGT GACGGAGATA CTGGCAGACA
961TCCAATCCCA CATGGATAGG TTGATGACTC AGATGGCCCA AGCCAAGGAA CAACTTGATA
1021CCTCTAATGA ATCAGCTGAG CCAAAGGCAG AGGGCGATGA GGAAGGACCC AGTGGTGCCA
1081GTGAAGAAGA GGACACATGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1141gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)