Construct: ORF ccsbBroadEn_08444
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012533.1_s300c1, BRDN0000394121
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZSCAN2 (54993)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54993 | ZSCAN2 | zinc finger and SCAN domain... | NM_017894.6 | 99.7% | 99.3% | 418G>T |
| 2 | human | 54993 | ZSCAN2 | zinc finger and SCAN domain... | NM_001007072.2 | 92.5% | 91.3% | (many diffs) |
| 3 | human | 54993 | ZSCAN2 | zinc finger and SCAN domain... | XM_017022393.2 | 88% | 82% | (many diffs) |
| 4 | human | 54993 | ZSCAN2 | zinc finger and SCAN domain... | XM_024449977.1 | 82.6% | 81.7% | 407_499del;511G>T |
| 5 | human | 54993 | ZSCAN2 | zinc finger and SCAN domain... | NM_181877.4 | 23.8% | 22% | (many diffs) |
| 6 | human | 54993 | ZSCAN2 | zinc finger and SCAN domain... | XM_024449975.1 | 23.8% | 22% | (many diffs) |
| 7 | human | 54993 | ZSCAN2 | zinc finger and SCAN domain... | XM_024449978.1 | 22.7% | 21.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 516
- ORF length:
- 450
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GGCTGCAGAC ATCCCGAGAG TGACCACTCC GCTGAGCTCC TTGGTCCAGG 121 TGCCTCAAGA GGAAGATAGA CAGGAGGAGG AGGTCACCAC CATGATCCTG GAGGATGACT 181 CCTGGGTGCA AGAAGCTGTG CTGCAGGAGG ATGGCCCTGA GTCTGAGCCC TTTCCCCAGA 241 GTGCTGGCAA GGGCGGCCCC CAGGAGGAGG TGACCAGGGG ACCACAGGGT GCACTCGGCC 301 GCCTCCGAGA GCTCTGCCGG CGCTGGCTGA GACCAGAGGT ACACACCAAG GAGCAGATGT 361 TAACCATGCT GCCAAAGGAA ATTCAGGCTT GGCTGCAAGA GCATCGGCCT GAAAGCAGTG 421 AGGAGGCAGC GGCCCTGGTG GAAGACTTGA CCCAGACCCT TCAGGACAGT GCTGTAGCTG 481 TCTTTGCTTC CCTTCCGGTG GAGGTGACCA GTTTGTACCC AACTTTCTTG TACAAAGTtg 541 gcattataag aaagcattgc ttatcaattt gttgcaacga ac