Transcript: Human XM_024449977.1

PREDICTED: Homo sapiens zinc finger and SCAN domain containing 2 (ZSCAN2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZSCAN2 (54993)
Length:
964
CDS:
109..654

Additional Resources:

NCBI RefSeq record:
XM_024449977.1
NBCI Gene record:
ZSCAN2 (54993)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024449977.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234687 AGAGGCCTCAGGTTGTTATTT pLKO_005 712 3UTR 100% 15.000 10.500 N ZSCAN2 n/a
2 TRCN0000015843 AGGTGCCTCAAGAGGAAGATA pLKO.1 161 CDS 100% 5.625 3.938 N ZSCAN2 n/a
3 TRCN0000234683 GATGACTCCTGGGTGCAAGAA pLKO_005 217 CDS 100% 4.950 3.465 N ZSCAN2 n/a
4 TRCN0000015845 GATGTTAACCATGCTGCCAAA pLKO.1 399 CDS 100% 4.050 2.835 N ZSCAN2 n/a
5 TRCN0000015846 CGCTGGCTGAGACCAGAGGTA pLKO.1 364 CDS 100% 0.000 0.000 N ZSCAN2 n/a
6 TRCN0000234686 TGGAGGTGACCAGTTTGTAAT pLKO_005 635 CDS 100% 13.200 7.920 N ZSCAN2 n/a
7 TRCN0000234684 CACCAAGGAGCAGATGTTAAC pLKO_005 387 CDS 100% 10.800 6.480 N ZSCAN2 n/a
8 TRCN0000015847 TGCCAAAGGAAATTCAGGCTT pLKO.1 413 CDS 100% 2.640 1.584 N ZSCAN2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024449977.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08444 pDONR223 100% 82.6% 81.7% None 407_499del;511G>T n/a
2 ccsbBroad304_08444 pLX_304 0% 82.6% 81.7% V5 407_499del;511G>T n/a
3 TRCN0000467418 AATCTCTAACTGCCTTATGGTTAG pLX_317 85.5% 82.6% 81.7% V5 407_499del;511G>T n/a
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