Construct: ORF ccsbBroadEn_08472

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005062.1_s300c1, BRDN0000393320
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR60 (55112)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55112 WDR60 WD repeat domain 60 NM_018051.5 99.9% 99.8% 675C>G;875C>T;2073A>G
2 human 55112 WDR60 WD repeat domain 60 XM_006716041.2 99.6% 99.5% (many diffs)
3 human 55112 WDR60 WD repeat domain 60 XM_011516367.2 99.4% 99.1% (many diffs)
4 human 55112 WDR60 WD repeat domain 60 XM_017012382.1 95.7% 95.6% (many diffs)
5 human 55112 WDR60 WD repeat domain 60 NM_001350914.1 95.5% 95.4% (many diffs)
6 human 55112 WDR60 WD repeat domain 60 XM_011516368.2 95.5% 95.4% (many diffs)
7 human 55112 WDR60 WD repeat domain 60 XM_011516369.2 95.3% 95.2% (many diffs)
8 human 55112 WDR60 WD repeat domain 60 XM_017012381.2 95.3% 95.2% (many diffs)
9 human 55112 WDR60 WD repeat domain 60 XR_242045.2 83.8% (many diffs)
10 human 55112 WDR60 WD repeat domain 60 NM_001350915.2 81.9% 71.1% (many diffs)
11 human 55112 WDR60 WD repeat domain 60 XM_005249549.1 81.7% 70.9% (many diffs)
12 human 55112 WDR60 WD repeat domain 60 XR_001744826.1 79.9% (many diffs)
13 human 55112 WDR60 WD repeat domain 60 XR_927486.2 79.8% (many diffs)
14 human 55112 WDR60 WD repeat domain 60 XR_001744828.1 79.6% (many diffs)
15 human 55112 WDR60 WD repeat domain 60 XR_428179.2 78% (many diffs)
16 human 55112 WDR60 WD repeat domain 60 XR_001744827.1 77.7% (many diffs)
17 human 55112 WDR60 WD repeat domain 60 XR_002956461.1 75% (many diffs)
18 human 55112 WDR60 WD repeat domain 60 NM_001350917.2 59.4% 58% (many diffs)
19 human 55112 WDR60 WD repeat domain 60 NM_001350918.2 59.4% 58% (many diffs)
20 human 55112 WDR60 WD repeat domain 60 XR_001744824.1 59.2% (many diffs)
21 human 55112 WDR60 WD repeat domain 60 XR_001744825.1 55.6% (many diffs)
22 human 55112 WDR60 WD repeat domain 60 XR_001744823.1 54.6% (many diffs)
23 human 55112 WDR60 WD repeat domain 60 NM_001350916.2 54.2% 54.3% 0_1ins1461;612A>G
24 human 55112 WDR60 WD repeat domain 60 XM_017012388.1 54.2% 54.3% 0_1ins1461;612A>G
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3264
ORF length:
3198
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GCCCGGGAAG AGAAGAACCA AAGATGATAC CTGGAAAGCA GATGACCTCA
121GAAAACATCT CTGGGCCATA CAGTCAGGTG GTTCCAAGGA AGAAAGAAAG CACAGAGAGA
181AGAAGCTGCG TAAGGAGTCT GAGATGGACC TTCCTGAACA TAAGGAGCCG AGGTGCAGGG
241ATCCCGACCA GGATGCCAGG AGCAGAGACA GGGTGGCCGA AGTCCACACC GCTAAGGAGA
301GTCCTCGTGG GGAGAGGGAC AGAGACAGAC AGAGGGAGAG GAGAAGAGAC GCAAAAGACC
361GGGAGAAAGA AAAGCTGAAG GAGAAACATC GAGAGGCAGA AAAGTCTCAC AGCAGAGGAA
421AGGACAGGGA AAAAGAAAAA GACAGAAGGG CCCGGAAGGA AGAGCTCCGG CAGACCGTGG
481CCCACCACAA CCTGCTGGGC CAGGAGACAC GCGACCGGCA GCTCCTGGAG CGGGCGGAGA
541GGAAAGGCCG CTCAGTAAGT AAAGTAAGAA GTGAAGAGAA AGATGAAGAC TCTGAAAGAG
601GAGATGAAGA TAGAGAAAGA AGATACCGAG AAAGAAAGCT GCAGTACGGA GACAGCAAGG
661ACAACCCTCT CAAGTACTGG CTTTATAAAG AAGAAGGCGA GAGGAGACAC AGGAAGCCCA
721GAGAGCCAGA TCGAGACAAG AAACACCGAG AAAAAAGCAG CACAAGGGAA AAAAGAGAGA
781AATATTCCAA AGAGAAAAGT AATTCATTCT CTGACAAAGG GGAAGAAAGA CATAAAGAAA
841AGCGACACAA AGAAGGTTTT CATTTTGATG ATGAGAGGCA CCAAAGCAAC GTGGATAGAA
901AAGAGAAATC GGCAAAAGAT GAGCCCAGGA AAAGGGAATT CCAGAATGGT GAACACAGAA
961ATCGAGGTGC AAGCTCAAAA AGAGATGGGA CCAGCAGCCA GCATGCTGAG AATTTAGTAA
1021GGAATCATGG AAAAGATAAA GATTCAAGAC GGAAGCATGG CCACGAGGAA GGCTCTTCTG
1081TGTGGTGGAA GCTGGACCAG AGGCCGGGAG GCGAGGAAAC CGTGGAAATT GAAAAGGAAG
1141AAACTGATTT AGAAAATGCT AGAGCTGATG CATATACAGC CAGTTGTGAA GATGATTTTG
1201AAGACTATGA AGATGACTTT GAGGTTTGTG ATGGTGATGA TGATGAAAGC AGTAATGAAC
1261CTGAGTCAAG AGAAAAACTG GAAGAACTTC CTCTAGCTCA AAAAAAGGAA ATACAAGAAA
1321TTCAAAGAGC TATTAATGCA GAAAATGAAA GGATTGGCGA GTTATCTTTG AAACTGTTTC
1381AGAAGCGAGG TAGAACAGAA TTTGAAAAGG AGCCCAGGAC AGATACAAAC AGTTCCCCTT
1441CCAGAGCCTC TGTTTGTGGA ATTTTTGTGG ATTTTGCCTC AGCTTCACAC CGTCAAAAGA
1501GTCGGACTCA GGCCCTTAAG CAAAAGATGC GAAGTACAAA ACTGCTTCGG CTCATTGACT
1561TAGATTTTTC ATTTACTTTC TCTCTCTTGG ATCTACCACC AGTAAATGAA TATGACATGT
1621ATATCAGAAA CTTTGGGAAA AAAAATACCA AGCAGGCATA TGTTCAGTGT AACGAAGATA
1681ATGTTGAAAG AGACATTCAA ACGGAGGAAA TAGAGACCAG GGAAGTGTGG ACCCAGCACC
1741CGGGAGAAAG TACTGTTGTA TCTGGAGGCA GTGAACAAAG AGATACCTCT GATGCTGTAG
1801TTATGCCAAA GATTGATACT CCAAGGTTAT GTAGCTTTCT GCGGGCTGCT TGTCAGGTGA
1861TGGCCGTTTT GCTGGAAGAG GATCGCTTGG CAGCTGAACC CAGCTGGAAT CTTAGGGCTC
1921AAGACAGGGC CCTGTATTTT AGTGACAGCT CATCTCAGCT GAACACCAGT CTACCATTCC
1981TTCAAAATCG AAAAGTATCC TCCTTGCACA CCTCCCGAGT TCAGAGGCAG ATGGTGGTCT
2041CCGTTCACGA CTTACCCGAG AAGAGCTTTG TGCCCCTGCT GGACAGCAAA TACGTCCTCT
2101GTGTGTGGGA TATTTGGCAG CCTTCAGGGC CACAGAAGGT TCTGATATGT GAGTCCCAGG
2161TCACGTGTTG CTGCTTGAGC CCTTTGAAAG CATTTTTACT GTTTGCCGGA ACAGCGCACG
2221GCTCAGTTGT CGTCTGGGAT TTGAGAGAAG ACTCAAGGCT GCATTACTCT GTGACGCTGA
2281GCGATGGCTT CTGGACGTTC CGGACCGCCA CGTTTTCCAC CGATGGAATC CTTACCTCAG
2341TAAACCACCG AAGCCCTCTT CAAGCAGTAG AACCTATCTC AACGTCCGTC CACAAAAAGC
2401AGAGCTTTGT GCTTTCACCC TTTTCTACTC AAGAAGAAAT GTCAGGTTTG TCCTTCCACA
2461TCGCTTCCTT GGATGAGAGT GGGGTTCTCA ATGTATGGGT GGTTGTTGAA TTACCAAAGG
2521CAGACATCGC AGGTTCAATA AGTGATTTAG GTCTGATGCC TGGAGGGAGG GTCAAGCTGG
2581TACATAGTGC TCTGATCCAG TTGGGTGACA GTCTTTCCCA TAAAGGTAAT GAATTTTGGG
2641GCACTACACA AACACTGAAT GTTAAATTTC TGCCTTCAGA TCCTAATCAC TTTATTATTG
2701GCACAGACAT GGGTCTCATA AGCCATGGCA CAAGACAAGA TTTGAGAGTG GCTCCCAAAC
2761TATTCAAACC TCAGCAACAT GGTATAAGAC CAGTGAAAGT TAATGTCATT GATTTTTCAC
2821CATTTGGAGA ACCAATATTT TTGGCCGGCT GTTCGGACGG AAGCATCAGG CTGCACCAGC
2881TGAGCTCCGC GTTTCCGCTC CTGCAGTGGG ACAGCAGCAC GGACAGCCAT GCGGTCACCG
2941GCCTGCAGTG GTCCCCAACC AGGCCTGCCG TGTTCCTGGT GCAGGACGAC ACATCCAACA
3001TCTACATCTG GGACCTCCTC CAGAGCGATC TGGGTCCTGT CGCCAAACAG CAGGTCTCCC
3061CCAACAGGCT GGTGGCCATG GCTGCGGTGG GTGAGCCTGA GAAGGCTGGT GGCAGCTTCC
3121TGGCCCTGGT GCTGGCCAGG GCGTCTGGCT CCATCGACAT CCAGCACCTG AAGAGGCGGT
3181GGGCGGCCCC GGAGGTGGAC GAGTGCAACA GGCTGCGTCT GCTTTTGCAG GAAGCCCTGT
3241GGCCAGAGGG AAAACTGCAC AAGCACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
3301agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)