Construct: ORF ccsbBroadEn_08507
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007318.1_s300c1, BRDN0000396007
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KLHL26 (55295)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55295 | KLHL26 | kelch like family member 26 | NM_018316.3 | 99.8% | 99.8% | 906C>T;1624G>A |
| 2 | human | 55295 | KLHL26 | kelch like family member 26 | NM_001345982.2 | 97.2% | 95.9% | (many diffs) |
| 3 | human | 55295 | KLHL26 | kelch like family member 26 | NM_001345981.2 | 95.3% | 95.3% | 261_347del;993C>T;1711G>A |
| 4 | human | 55295 | KLHL26 | kelch like family member 26 | NM_001345983.1 | 85.2% | 85.2% | 0_1ins270;636C>T;1354G>A |
| 5 | human | 55295 | KLHL26 | kelch like family member 26 | NM_001345984.2 | 23.4% | 22.1% | (many diffs) |
| 6 | human | 55295 | KLHL26 | kelch like family member 26 | NM_001345985.2 | 16.1% | 15.4% | (many diffs) |
| 7 | mouse | 234378 | Klhl26 | kelch-like 26 | NM_178771.3 | 81.9% | 85.3% | (many diffs) |
| 8 | mouse | 234378 | Klhl26 | kelch-like 26 | NM_001122830.1 | 73.7% | 76.9% | (many diffs) |
| 9 | mouse | 234378 | Klhl26 | kelch-like 26 | XM_006509654.3 | 70.9% | 74.4% | (many diffs) |
| 10 | mouse | 234378 | Klhl26 | kelch-like 26 | XM_011242298.1 | 70.9% | 74.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1911
- ORF length:
- 1845
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGAGTCCGGC GGTAGCAGCG GTGGTGCTGG TGGCGGCGGC GCTTTCGGCG 121 CGGGCCCGGG CCCCGAGCGC CCGAACAGCA CGGCCGACAA GAACGGGGCC CTCAAGTGCA 181 CCTTCTCGGC ACCCAGCCAC AGCACCAGCC TCCTGCAGGG CCTGGCCACC CTCCGCGCTC 241 AGGGCCAGCT CCTCGATGTT GTGCTGACTA TTAACAGAGA GGCCTTTCCT GCACACAAGG 301 TCGTCCTGGC TGCCTGCAGC GACTACTTCA GGGCCATGTT CACCGGCGGC ATGCGGGAGG 361 CAAGCCAGGA CGTCATCGAG CTGAAGGGCG TGTCGGCCCG TGGCCTGCGG CACATCATCG 421 ACTTCGCCTA CAGCGCCGAG GTGACACTGG ACCTGGACTG CGTGCAGGAC GTGCTGGGCG 481 CGGCCGTGTT CTTGCAGATG CTGCCCGTGG TGGAGCTGTG CGAGGAGTTC CTGAAGGCGG 541 CCATGAGCGT GGAGACCTGC CTCAACATCG GCCAGATGGC CACCACCTTC AGCCTGGCCT 601 CGCTGCGAGA GTCGGTGGAT GCCTTCACCT TCCGGCACTT CCTGCAGATC GCCGAGGAGG 661 AGGATTTCCT GCGCCTGCCA CTGGAGCGCC TGGTCTTCTT CCTGCAGAGC AACCGGCTGC 721 AGAGCTGTGC CGAGATCGAC CTGTTCCGCG CGGCCGTCCG CTGGCTGCAG CATGACCCGG 781 CCCGGCGGCC GCGCGCCAGC CACGTGCTCT GCCACATTCG CTTCCCGCTC ATGCAGTCGT 841 CCGAGCTGGT GGACAGCGTG CAGACGCTGG ACATCATGGT GGAGGACGTG CTGTGCCGCC 901 AGTATCTGCT GGAGGCCTTC AACTACCAGG TGCTGCCCTT CCGGCAGCAC GAGATGCAGT 961 CTCCGCGCAC TGCCGTGCGC TCGGATGTGC CCTCGCTCGT CACCTTCGGC GGCACGCCCT 1021 ACACCGACAG CGACCGCTCG GTCAGCAGCA AGGTCTACCA GCTGCCTGAG CCGGGAGCCC 1081 GCCACTTCCG CGAGCTCACG GAGATGGAGG TAGGCTGCAG CCACACGTGC GTGGCCGTGC 1141 TGGACAATTT TGTGTACGTG GCCGGGGGGC AGCACCTGCA GTACCGCAGC GGCGAGGGCG 1201 CAGTGGACGC CTGCTACCGC TACGACCCCC ACCTGAATCG CTGGCTGCGC CTGCAGGCCA 1261 TGCAGGAAAG CCGCATCCAG TTCCAGCTGA ACGTGCTGTG CGGCATGGTG TACGCCACGG 1321 GCGGCCGCAA CCGAGCCGGC AGCCTGGCCT CCGTGGAGCG GTACTGCCCC CGGCGCAATG 1381 AGTGGGGCTA CGCCTGCTCG CTGAAGCGCC GTACCTGGGG CCATGCTGGG GCCGCCTCAG 1441 GGGGCCGCCT CTACATCTCG GGTGGCTACG GGATCTCAGT GGAGGACAAG AAGGCCCTGC 1501 ACTGCTACGA CCCCGTGGCC GACCAGTGGG AGTTCAAGGC GCCCATGAGC GAACCCCGCG 1561 TGCTACACGC CATGGTGGGT GCCGGCGGCC GCATCTATGC CCTCGGGGGC CGCATGGACC 1621 ACGTGGACCG CTGCTTCGAC GTGCTGGCTG TGGAGTACTA TGTGCCGGAG ACGGACCAGT 1681 GGACCAGCAT GAGCCCCATG CGGGCCGGCC AGTCAGAGGC CGGCTGCTGC CTGCTGGAGA 1741 GGAAGATCTA CATCGTCGGG GGCTACAACT GGCGTCTCAA CAACGTCACG GGCATCGTAC 1801 AGGTGTACAA CACGGACACC GACGAGTGGG AGCGGGACCT GCACTTCCCG GAGTCCTTCG 1861 CAGGCATAGC CTGCGCCCCC GTCCTGCTGC CCCGGGCCGG GACCAGGAGG TACCCAACTT 1921 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac