Transcript: Mouse XM_011242298.1

PREDICTED: Mus musculus kelch-like 26 (Klhl26), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Klhl26 (234378)
Length:
3218
CDS:
424..2001

Additional Resources:

NCBI RefSeq record:
XM_011242298.1
NBCI Gene record:
Klhl26 (234378)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011242298.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000243534 CCTGCGTCACATCATCGATTT pLKO_005 492 CDS 100% 10.800 15.120 N Klhl26 n/a
2 TRCN0000243530 GCTATGATCCACAGCGCAATC pLKO_005 1307 CDS 100% 6.000 8.400 N Klhl26 n/a
3 TRCN0000243531 CATGCACGCACACAATCAAAT pLKO_005 2364 3UTR 100% 13.200 9.240 N Klhl26 n/a
4 TRCN0000243532 ACAACTGGAGGCTGAACAATG pLKO_005 1853 CDS 100% 10.800 7.560 N Klhl26 n/a
5 TRCN0000243533 CTCTACATCTCAGGTGGTTAT pLKO_005 1537 CDS 100% 10.800 7.560 N Klhl26 n/a
6 TRCN0000175766 GTCAACAGTGAAGCCTTTCAT pLKO.1 358 5UTR 100% 5.625 3.938 N Klhl26 n/a
7 TRCN0000217040 CTAGAGAGGAAGATCTACATC pLKO.1 1822 CDS 100% 4.950 3.465 N Klhl26 n/a
8 TRCN0000194459 GCTGAACAATGTCACAGGCAT pLKO.1 1863 CDS 100% 2.640 1.848 N Klhl26 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011242298.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08507 pDONR223 100% 70.9% 74.4% None (many diffs) n/a
2 ccsbBroad304_08507 pLX_304 0% 70.9% 74.4% V5 (many diffs) n/a
3 TRCN0000480730 ATTATGAGCCTCCATTGTAAGTTC pLX_317 24.3% 70.9% 74.4% V5 (many diffs) n/a
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