Construct: ORF ccsbBroadEn_08519

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011520.1_s300c1, BRDN0000387485
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNLS (55328)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55328 RNLS renalase, FAD dependent ami... NM_001031709.3 99.8% 99.4% 4G>T;111G>C
2 human 55328 RNLS renalase, FAD dependent ami... NM_018363.3 89.4% 85.3% (many diffs)
3 human 55328 RNLS renalase, FAD dependent ami... XM_011539924.3 89.4% 85.3% (many diffs)
4 human 55328 RNLS renalase, FAD dependent ami... XM_017016380.2 89.4% 85.3% (many diffs)
5 human 55328 RNLS renalase, FAD dependent ami... XM_005269946.2 88% 84.8% (many diffs)
6 human 55328 RNLS renalase, FAD dependent ami... XM_011539927.3 86.1% 84.1% (many diffs)
7 human 55328 RNLS renalase, FAD dependent ami... XM_017016381.2 85.1% 84.7% 4G>T;111G>C;876_877ins150
8 human 55328 RNLS renalase, FAD dependent ami... XM_005269947.2 77.2% 64.4% (many diffs)
9 human 55328 RNLS renalase, FAD dependent ami... XM_005269948.3 75.5% 75.1% 4G>T;111G>C;114_115ins249
10 human 55328 RNLS renalase, FAD dependent ami... XM_005269949.5 67.9% 67.5% (many diffs)
11 human 55328 RNLS renalase, FAD dependent ami... XM_005269950.4 65.3% 61.3% (many diffs)
12 human 55328 RNLS renalase, FAD dependent ami... XM_017016382.2 65.3% 61.3% (many diffs)
13 human 55328 RNLS renalase, FAD dependent ami... XM_024448063.1 63.8% 60.6% (many diffs)
14 human 55328 RNLS renalase, FAD dependent ami... XM_017016383.2 55.8% 48% (many diffs)
15 human 55328 RNLS renalase, FAD dependent ami... XM_017016384.2 53% 41.5% (many diffs)
16 human 55328 RNLS renalase, FAD dependent ami... XM_017016385.1 52% 48.5% (many diffs)
17 human 55328 RNLS renalase, FAD dependent ami... XR_001747122.2 17.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1092
ORF length:
1026
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GCAGGTGCTG ATCGTGGGCG CCGGGATGAC AGGAAGCTTG TGCGCTGCGC
121TGCTGAGGAG GCAGACGTCC GGTCCCTTGT ACCTTGCTGT GTGGGACAAG GCTGACGACT
181CAGGGGGAAG AATGACTACA GCCTGCAGTC CTCATAATCC TCAGTGCACA GCTGACTTGG
241GTGCTCAGTA CATCACCTGC ACTCCTCATT ATGCCAAAAA ACACCAACGT TTTTATGATG
301AACTGTTAGC CTATGGCGTT TTGAGGCCTC TAAGCTCGCC TATTGAAGGA ATGGTGATGA
361AAGAAGGAGA CTGTAACTTT GTGGCACCTC AAGGAATTTC TTCAATTATT AAGCATTACT
421TGAAAGAATC AGGTGCAGAA GTCTACTTCA GACATCGTGT GACACAGATC AACCTAAGAG
481ATGACAAATG GGAAGTATCC AAACAAACAG GCTCCCCTGA GCAGTTTGAT CTTATTGTTC
541TCACAATGCC AGTTCCTGAG ATTCTGCAGC TTCAAGGTGA CATCACCACC TTAATTAGTG
601AATGCCAAAG GCAGCAACTG GAGGCTGTGA GCTACTCCTC TCGATATGCT CTGGGCCTCT
661TTTATGAAGC TGGTACGAAG ATTGATGTCC CTTGGGCTGG GCAGTACATC ACCAGTAATC
721CCTGCATACG CTTCGTCTCC ATTGATAATA AGAAGCGCAA TATAGAGTCA TCAGAAATTG
781GGCCTTCCCT CGTGATTCAC ACCACTGTCC CATTTGGAGT TACATACTTG GAACACAGCA
841TTGAGGATGT GCAAGAGTTA GTCTTCCAGC AGCTGGAAAA CATTTTGCCG GGTTTGCCTC
901AGCCAATTGC TACCAAATGC CAAAAATGGA GACATTCACA GGTTACAAAT GCTGCTGCCA
961ACTGTCCTGG CCAAATGACT CTGCATCACA AACCTTTCCT TGCATGTGGA GGGGATGGAT
1021TTACTCAGTC CAACTTTGAT GGCTGCATCA CTTCTGCCCT ATGTGTTCTG GAAGCTTTAA
1081AGAATTATAT TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1141caatttgttg caacgaac

Download FASTA (ORF) (Full)