Transcript: Human NM_018363.3

Homo sapiens renalase, FAD dependent amine oxidase (RNLS), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-21
Taxon:
Homo sapiens (human)
Gene:
RNLS (55328)
Length:
2180
CDS:
136..1083

Additional Resources:

NCBI RefSeq record:
NM_018363.3
NBCI Gene record:
RNLS (55328)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018363.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000377723 AGCCTTTAGGATAGCTATTAT pLKO_005 1150 3UTR 100% 15.000 21.000 N RNLS n/a
2 TRCN0000151102 GCTTCGTCTCCATTGATAATA pLKO.1 800 CDS 100% 15.000 21.000 N RNLS n/a
3 TRCN0000371441 GTGAGCTACTCCTCTCGATAT pLKO_005 697 CDS 100% 10.800 15.120 N RNLS n/a
4 TRCN0000156235 CCTCTAAGCTCGCCTATTGAA pLKO.1 397 CDS 100% 5.625 7.875 N RNLS n/a
5 TRCN0000151231 GATCAACCTAAGAGATGACAA pLKO.1 537 CDS 100% 4.950 6.930 N RNLS n/a
6 TRCN0000339178 TGATAATAAGAAGCGCAATAT pLKO_005 813 CDS 100% 13.200 10.560 N Rnls n/a
7 TRCN0000371379 TAGGGACTTGAACGAACATTT pLKO_005 1363 3UTR 100% 13.200 9.240 N RNLS n/a
8 TRCN0000154508 GCTGGTGTGATTCTAGGATGT pLKO.1 1021 CDS 100% 4.050 2.835 N RNLS n/a
9 TRCN0000151348 GCTTTATTCACAACAGCCAAA pLKO.1 1404 3UTR 100% 4.050 2.835 N RNLS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018363.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08519 pDONR223 100% 89.4% 85.3% None (many diffs) n/a
2 ccsbBroad304_08519 pLX_304 0% 89.4% 85.3% V5 (many diffs) n/a
3 TRCN0000471759 AAACGTTTCAACTTCTCTCCTGCA pLX_317 42.7% 89.4% 85.3% V5 (many diffs) n/a
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