Construct: ORF ccsbBroadEn_08525

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004034.1_s300c1, BRDN0000395411
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STRBP (55342)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55342 STRBP spermatid perinuclear RNA b... NM_018387.5 99.9% 100% 960C>T
2 human 55342 STRBP spermatid perinuclear RNA b... XM_017014896.1 99.9% 100% 960C>T
3 human 55342 STRBP spermatid perinuclear RNA b... XM_024447602.1 99.9% 100% 960C>T
4 human 55342 STRBP spermatid perinuclear RNA b... NM_001171137.2 97.8% 97.9% 0_1ins42;918C>T
5 human 55342 STRBP spermatid perinuclear RNA b... XM_017014897.1 97.7% 97.7% 960C>T;1896_1897ins45
6 human 55342 STRBP spermatid perinuclear RNA b... XM_017014890.1 97% 96.4% (many diffs)
7 human 55342 STRBP spermatid perinuclear RNA b... XM_017014891.2 97% 96.4% (many diffs)
8 human 55342 STRBP spermatid perinuclear RNA b... XM_017014892.1 97% 96.4% (many diffs)
9 human 55342 STRBP spermatid perinuclear RNA b... XM_017014898.1 96.3% 96.4% 960C>T;1944_1945ins72
10 human 55342 STRBP spermatid perinuclear RNA b... XM_024447603.1 96.3% 96.4% 960C>T;1944_1945ins72
11 human 55342 STRBP spermatid perinuclear RNA b... XR_001746349.1 75.7% (many diffs)
12 human 55342 STRBP spermatid perinuclear RNA b... XR_001746348.1 74.8% (many diffs)
13 human 55342 STRBP spermatid perinuclear RNA b... XM_024447605.1 72.8% 72.9% 0_1ins546;414C>T
14 human 55342 STRBP spermatid perinuclear RNA b... XM_024447604.1 70.3% 69.5% (many diffs)
15 human 55342 STRBP spermatid perinuclear RNA b... NR_033234.2 31.4% (many diffs)
16 human 55342 STRBP spermatid perinuclear RNA b... XR_001746347.1 22.3% (many diffs)
17 human 55342 STRBP spermatid perinuclear RNA b... XR_001746346.1 22% (many diffs)
18 mouse 20744 Strbp spermatid perinuclear RNA b... NM_009261.3 93.9% 98.9% (many diffs)
19 mouse 20744 Strbp spermatid perinuclear RNA b... XM_011239046.2 93.9% 98.9% (many diffs)
20 mouse 20744 Strbp spermatid perinuclear RNA b... XM_017316820.1 93.9% 98.9% (many diffs)
21 mouse 20744 Strbp spermatid perinuclear RNA b... XM_017316821.1 93.9% 98.9% (many diffs)
22 mouse 20744 Strbp spermatid perinuclear RNA b... XM_017316822.1 93.9% 98.9% (many diffs)
23 mouse 20744 Strbp spermatid perinuclear RNA b... XM_017316823.1 93.9% 98.9% (many diffs)
24 mouse 20744 Strbp spermatid perinuclear RNA b... XM_011239047.2 90.5% 95.3% (many diffs)
25 mouse 20744 Strbp spermatid perinuclear RNA b... XM_011239043.2 90.3% 91.9% (many diffs)
26 mouse 20744 Strbp spermatid perinuclear RNA b... XM_011239044.2 90.3% 91.9% (many diffs)
27 mouse 20744 Strbp spermatid perinuclear RNA b... XM_011239045.2 90.3% 91.9% (many diffs)
28 mouse 20744 Strbp spermatid perinuclear RNA b... XM_017316819.1 90.3% 91.9% (many diffs)
29 mouse 20744 Strbp spermatid perinuclear RNA b... XR_866011.2 45.2% (many diffs)
30 mouse 20744 Strbp spermatid perinuclear RNA b... XR_001781603.1 43.4% (many diffs)
31 mouse 20744 Strbp spermatid perinuclear RNA b... XR_866010.2 42.3% (many diffs)
32 mouse 20744 Strbp spermatid perinuclear RNA b... XR_866009.2 41.8% (many diffs)
33 mouse 20744 Strbp spermatid perinuclear RNA b... XR_001781604.1 24% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2082
ORF length:
2016
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG ATCTATTCGA TCTTTTGCTA ATGATGATCG CCATGTTATG GTGAAACATT
121CAACAATCTA TCCATCTCCG GAGGAACTTG AAGCTGTTCA GAATATGGTA TCTACTGTTG
181AATGTGCTCT TAAACATGTC TCAGATTGGT TGGATGAAAC AAATAAAGGC ACAAAAACAG
241AGGGTGAGAC AGAAGTGAAG AAAGATGAGG CCGGAGAAAA CTATTCCAAG GATCAAGGTG
301GTCGGACATT GTGTGGTGTA ATGAGGATTG GCCTGGTTGC AAAAGGCTTG CTGATTAAAG
361ATGATATGGA CTTGGAGCTG GTTTTAATGT GCAAAGACAA ACCCACAGAG ACCCTGTTAA
421ATACAGTCAA AGATAATCTT CCTATTCAGA TTCAGAAACT CACAGAAGAG AAATATCAAG
481TGGAACAATG TGTAAATGAG GCATCTATTA TAATTCGGAA TACAAAAGAG CCCACGCTAA
541CTTTGAAGGT GATACTTACC TCACCTCTAA TTAGGGACGA ATTGGAGAAG AAGGATGGAG
601AAAATGTTTC GATGAAAGAT CCTCCGGACT TATTGGACAG GCAGAAATGC CTGAACGCCT
661TGGCGTCTCT TCGACATGCC AAATGGTTTC AGGCAAGGGC AAATGGATTA AAATCATGTG
721TAATTGTCCT CCGCATTCTG CGTGATTTGT GCAACAGAGT CCCCACATGG GCACCATTGA
781AAGGATGGCC ACTAGAACTT ATATGTGAAA AGTCTATAGG TACTTGTAAT AGACCTTTGG
841GCGCTGGGGA GGCCTTGAGA CGAGTAATGG AGTGTTTGGC ATCTGGAATA CTACTTCCTG
901GGGGTCCTGG TCTTCATGAT CCTTGTGAGC GAGACCCAAC AGATGCTCTG AGCTATATGA
961CCATCCAGCA AAAAGAAGAT ATTACCCACA GTGCACAGCA TGCACTCAGA CTATCAGCCT
1021TTGGTCAGAT TTACAAAGTG CTGGAGATGG ACCCCCTTCC ATCTAGTAAG CCTTTTCAGA
1081AGTATTCCTG GTCAGTTACT GATAAAGAAG GTGCTGGGTC TTCAGCTCTA AAGAGGCCAT
1141TTGAAGATGG ATTAGGGGAT GATAAAGACC CCAACAAGAA GATGAAACGA AACTTAAGGA
1201AAATTCTGGA TAGTAAAGCA ATAGACCTTA TGAATGCACT AATGAGGCTA AATCAGATCA
1261GGCCTGGGCT TCAGTATAAG CTCCTATCTC AGTCTGGCCC CGTTCATGCC CCAGTCTTCA
1321CAATGTCTGT AGATGTGGAT GGCACAACAT ATGAAGCCTC AGGACCATCC AAGAAAACAG
1381CAAAACTTCA CGTAGCGGTG AAGGTATTGC AGGCAATGGG ATATCCAACA GGCTTTGATG
1441CAGATATTGA ATGTATGAGT TCCGATGAAA AATCAGATAA TGAAAGTAAA AATGAAACAG
1501TGTCTTCAAA CTCAAGCAAT AATACTGGAA ATTCTACAAC TGAAACCTCC AGTACCTTAG
1561AGGTAAGAAC TCAGGGCCCT ATCCTCACAG CAAGTGGCAA AAACCCTGTA ATGGAGCTCA
1621ATGAAAAAAG AAGAGGTCTC AAGTATGAAC TCATCTCAGA GACTGGTGGA AGCCATGACA
1681AGCGCTTTGT AATGGAGGTA GAAGTAGATG GACAGAAATT CAGAGGCGCA GGTCCAAATA
1741AGAAAGTGGC AAAGGCGAGT GCAGCTTTAG CTGCCTTGGA GAAACTGTTT TCTGGACCCA
1801ATGCGGCAAA TAATAAGAAA AAGAAGATTA TCCCTCAGGC AAAGGGCGTT GTGAATACAG
1861CTGTGTCTGC AGCAGTCCAA GCTGTTCGGG GCAGAGGAAG AGGAACTCTA ACAAGGGGAG
1921CTTTTGTTGG GGCGACAGCT GCTCCTGGCT ACATAGCTCC AGGCTATGGA ACACCATATG
1981GTTACAGCAC AGCTGCCCCT GCCTATGGTT TACCCAAGAG AATGGTTCTG TTACCCGTTA
2041TGAAATTTCC AACATATCCT GTTCCCCACT ACTCATTCTT TTACCCAACT TTCTTGTACA
2101AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)