Construct: ORF ccsbBroadEn_08527
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010222.1_s300c1, BRDN0000392483
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLCXD1 (55344)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | NM_001370370.1 | 99.8% | 100% | 6T>C |
| 2 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | NM_001370371.1 | 99.8% | 100% | 6T>C |
| 3 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | NM_001370373.1 | 99.8% | 100% | 6T>C |
| 4 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | NM_018390.4 | 99.8% | 100% | 6T>C |
| 5 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | XM_011545633.3 | 99.8% | 100% | 6T>C |
| 6 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | XM_011546180.3 | 99.8% | 100% | 6T>C |
| 7 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | XM_024452395.1 | 99.8% | 100% | 6T>C |
| 8 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | XM_024452491.1 | 99.8% | 100% | 6T>C |
| 9 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | NM_001370372.1 | 83.7% | 83.9% | 6T>C;392_393ins156 |
| 10 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | NR_028057.2 | 47% | 1_263del;269T>C;1233_2056del | |
| 11 | human | 55344 | PLCXD1 | phosphatidylinositol specif... | NR_163416.1 | 30.1% | 1_325del;331T>C;1295_3208del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1035
- ORF length:
- 969
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CGGGCAGGTG AGCGCTTCCA ACAGCTTCTC GAGGCTGCAC TGCAGAAATG 121 CCAACGAGGA CTGGATGTCG GCACTGTGTC CCCGGCTCTG GGATGTGCCC CTCCACCACC 181 TCTCCATCCC AGGGAGCCAC GACACGATGA CGTACTGCCT GAACAAGAAG TCCCCCATTT 241 CGCACGAGGA GTCCCGGCTG CTGCAGCTGC TGAACAAGGC CTTGCCCTGC ATCACGCGCC 301 CTGTCGTGCT GAAATGGTCC GTCACCCAGG CACTGGACGT CACAGAGCAG CTGGATGCCG 361 GGGTGCGGTA CCTGGACCTG CGGATAGCCC ACATGCTGGA GGGCTCGGAG AAGAACCTGC 421 ACTTTGTCCA TATGGTGTAC ACAACGGCGC TGGTGGAGGA CACACTCACG GAAATCTCGG 481 AGTGGCTGGA GCGGCATCCA CGCGAGGTGG TCATCCTGGC CTGCAGAAAC TTCGAGGGGC 541 TGAGCGAGGA CCTGCACGAG TACCTGGTCG CCTGTATCAA GAACATCTTC GGGGACATGC 601 TGTGTCCTCG TGGGGAGGTG CCGACACTGC GGCAGCTGTG GTCCCGGGGC CAACAGGTCA 661 TCGTCTCCTA TGAAGACGAG AGCTCCTTGC GCCGGCACCA CGAGCTGTGG CCAGGAGTCC 721 CCTACTGGTG GGGAAACAGG GTGAAGACCG AGGCCCTCAT CCGATACCTG GAGACCATGA 781 AGAGCTGCGG CCGCCCAGGA GGGTTGTTCG TGGCCGGCAT CAACCTCACG GAGAACCTGC 841 AGTACGTTCT GGCGCACCCG TCCGAGTCCC TGGAGAAGAT GACGCTGCCC AACCTTCCGC 901 GGCTGAGCGC GTGGGTCCGA GAGCAGTGCC CGGGGCCGGG TTCACGGTGC ACCAACATCA 961 TCGCGGGGGA CTTCATCGGC GCAGACGGCT TCGTCAGTGA CGTCATCGCG CTCAATCAGA 1021 AGCTGCTGTG GTGCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1081 tatcaatttg ttgcaacgaa c