Construct: ORF ccsbBroadEn_08535

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003630.1_s300c1, BRDN0000386547
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSGALNACT2 (55454)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55454 CSGALNACT2 chondroitin sulfate N-acety... NM_018590.5 99.9% 100% 18G>T
2 human 55454 CSGALNACT2 chondroitin sulfate N-acety... XM_011539938.2 80.3% 76.9% (many diffs)
3 human 55454 CSGALNACT2 chondroitin sulfate N-acety... NM_001319654.1 76.6% 71.1% 18G>T;1158_1159ins95;1248_1249ins283
4 human 55454 CSGALNACT2 chondroitin sulfate N-acety... XM_017016388.2 76.6% 71.1% 18G>T;1158_1159ins95;1248_1249ins283
5 human 55454 CSGALNACT2 chondroitin sulfate N-acety... NM_001319656.1 63% 59.6% 18G>T;979_980ins274;1026_1027ins326
6 human 55454 CSGALNACT2 chondroitin sulfate N-acety... XM_017016389.2 63% 59.6% 18G>T;979_980ins274;1026_1027ins326
7 human 55454 CSGALNACT2 chondroitin sulfate N-acety... XM_017016391.2 54.7% 54.2% (many diffs)
8 human 55454 CSGALNACT2 chondroitin sulfate N-acety... XR_945783.3 41.9% (many diffs)
9 human 55454 CSGALNACT2 chondroitin sulfate N-acety... NR_135077.1 41.2% (many diffs)
10 human 55454 CSGALNACT2 chondroitin sulfate N-acety... XR_002956986.1 38.3% (many diffs)
11 mouse 78752 Csgalnact2 chondroitin sulfate N-acety... NM_030165.3 90.4% 92.6% (many diffs)
12 mouse 78752 Csgalnact2 chondroitin sulfate N-acety... XM_006506776.3 90.4% 92.6% (many diffs)
13 mouse 78752 Csgalnact2 chondroitin sulfate N-acety... XM_006506777.3 90.4% 92.6% (many diffs)
14 mouse 78752 Csgalnact2 chondroitin sulfate N-acety... XM_006506778.3 90.4% 92.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1692
ORF length:
1626
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC TAGAAGAGGA CTTATTCTTC ACACCCGGAC CCACTGGTTG CTGTTGGGCC
121TTGCTTTGCT CTGCAGTTTG GTATTATTTA TGTACCTCCT GGAATGTGCC CCCCAGACTG
181ATGGAAATGC ATCTCTTCCT GGTGTTGTTG GGGAAAATTA TGGTAAAGAG TATTATCAAG
241CCCTCCTACA GGAACAAGAA GAACATTATC AGACCAGGGC AACCAGTCTG AAACGCCAAA
301TTGCCCAACT AAAACAAGAA TTACAAGAAA TGAGTGAGAA GATGCGGTCA CTGCAAGAAA
361GAAGGAATGT AGGGGCTAAT GGCATAGGCT ATCAGAGCAA CAAAGAGCAA GCACCTAGTG
421ATCTTTTAGA GTTTCTTCAT TCCCAAATTG ACAAAGCTGA AGTTAGCATA GGGGCCAAAC
481TACCCAGTGA GTATGGGGTC ATTCCCTTTG AAAGTTTTAC CTTAATGAAA GTATTTCAAT
541TGGAAATGGG TCTCACTCGC CATCCTGAAG AAAAGCCAGT TAGAAAAGAC AAACGAGATG
601AATTGGTGGA AGTTATTGAA GCGGGCTTGG AGGTCATTAA TAATCCTGAT GAAGATGATG
661AACAAGAAGA TGAGGAGGGT CCCCTTGGAG AGAAACTGAT ATTTAATGAA AATGACTTCG
721TAGAAGGTTA TTATCGCACT GAGAGAGATA AGGGCACACA GTATGAACTC TTTTTTAAGA
781AAGCAGACCT TACGGAATAT AGACATGTGA CCCTCTTCCG CCCTTTTGGA CCTCTCATGA
841AAGTGAAGAG TGAGATGATT GACATCACTA GATCAATTAT TAATATCATT GTGCCACTTG
901CTGAAAGAAC TGAAGCATTT GTACAATTTA TGCAGAACTT CAGGGATGTT TGTATTCATC
961AAGACAAGAA GATTCATCTC ACAGTGGTGT ATTTTGGTAA AGAAGGACTG TCTAAAGTCA
1021AGTCTATCCT AGAATCTGTC ACCAGTGAGT CTAATTTTCA CAATTACACC TTGGTCTCAT
1081TGAATGAAGA ATTTAATCGT GGACGAGGAC TAAATGTGGG TGCCCGAGCT TGGGACAAGG
1141GAGAGGTCTT GATGTTTTTC TGTGATGTTG ATATCTATTT CTCAGCCGAA TTCCTTAACA
1201GCTGCCGGTT AAATGCTGAG CCAGGTAAGA AGGTGTTTTA CCCTGTGGTG TTCAGTCTTT
1261ACAATCCTGC CATTGTTTAT GCCAACCAGG AAGTGCCACC ACCTGTGGAG CAGCAGCTGG
1321TTCACAAAAA GGATTCTGGC TTTTGGCGAG ATTTTGGCTT TGGAATGACT TGTCAGTATC
1381GTTCAGATTT CCTGACCATT GGTGGATTTG ACATGGAAGT GAAAGGTTGG GGTGGAGAAG
1441ATGTTCATCT TTATCGAAAA TACTTACATG GTGACCTCAT TGTGATTCGG ACTCCGGTTC
1501CTGGTCTTTT CCACCTCTGG CATGAAAAGC GCTGTGCTGA TGAGCTGACC CCCGAGCAGT
1561ACCGCATGTG CATCCAGTCT AAAGCCATGA ATGAGGCCTC TCACTCCCAC CTGGGAATGC
1621TGGTCTTCAG GGAGGAAATA GAGACGCATC TTCATAAACA GGCATACAGG ACAAACAGTG
1681AAGCTGTTGG TTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1741caatttgttg caacgaac

Download FASTA (ORF) (Full)