Construct: ORF ccsbBroadEn_08573
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004112.1_s300c1, BRDN0000393007
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFP64 (55734)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | NM_018197.3 | 99.8% | 99.8% | 1182T>C;1352G>A;1548C>T |
| 2 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | NM_199426.2 | 99.5% | 99.4% | (many diffs) |
| 3 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | NM_022088.5 | 91.9% | 91.9% | (many diffs) |
| 4 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | XM_017027946.2 | 91.6% | 91.4% | (many diffs) |
| 5 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | XM_005260449.1 | 76.6% | 76.6% | (many diffs) |
| 6 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | XM_011528900.2 | 76.6% | 76.6% | (many diffs) |
| 7 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | XM_017027948.2 | 76.6% | 76.6% | (many diffs) |
| 8 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | XM_017027949.1 | 76.6% | 76.6% | (many diffs) |
| 9 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | NM_199427.2 | 51.1% | 47.9% | (many diffs) |
| 10 | human | 55734 | ZFP64 | ZFP64 zinc finger protein | XM_017027945.2 | 50.9% | 47.5% | (many diffs) |
| 11 | mouse | 22722 | Zfp64 | zinc finger protein 64 | NM_009564.2 | 84.9% | 87.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2109
- ORF length:
- 2043
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CGCGAGCAGC GAGGGCGAGA GCTTCGCGGG CTCGGTGCAA ATTCCAGGTG 121 GCACAACGGT GCTGGTGGAG CTGACTCCCG ACATCCATAT CTGCGGCATC TGCAAGCAGC 181 AGTTTAACAA CCTGGATGCC TTTGTAGCTC ACAAGCAAAG TGGCTGCCAG CTGACAGGCA 241 CATCCGCAGC AGCCCCCAGC ACGGTCCAGT TTGTATCGGA GGAAACAGTG CCTGCCACCC 301 AGACTCAGAC CACCACCAGA ACCATCACCT CGGAGACCCA GACAATCACA GTTTCAGCTC 361 CAGAATTTGT TTTTGAACAT GGCTATCAAA CTTACCTGCC CACGGAAAGT AATGAAAACC 421 AGACAGCCAC TGTCATCTCT CTCCCTGCCA AGTCACGCAC CAAAAAGCCC ACAACACCAC 481 CTGCTCAGAA AAGGCTTAAC TGTTGCTATC CAGGTTGCCA ATTCAAGACT GCTTATGGCA 541 TGAAGGACAT GGAGCGGCAT TTAAAAATTC ACACGGGAGA CAAACCCCAT AAGTGTGAAG 601 TCTGTGGCAA GTGCTTTAGC CGGAAAGACA AGCTGAAAAC TCACATGCGG TGCCACACGG 661 GCGTGAAGCC CTACAAGTGT AAGACGTGTG ACTACGCCGC TGCCGACAGC AGCAGCCTCA 721 ACAAGCACCT GAGGATCCAC TCGGACGAGC GGCCCTTCAA ATGCCAGATC TGCCCCTACG 781 CCAGCCGCAA CTCCAGCCAG CTCACTGTCC ACCTGCGATC CCACACGGGG GACGCCCCCT 841 TCCAGTGCTG GCTCTGTAGC GCCAAGTTCA AAATCAGCTC GGACTTGAAA AGGCACATGC 901 GGGTGCACTC GGGGGAGAAG CCTTTCAAGT GCGAGTTCTG CAATGTCCGC TGCACCATGA 961 AGGGGAACCT CAAGTCGCAC ATCCGTATCA AGCACAGCGG GAATAACTTC AAGTGTCCTC 1021 ATTGCGACTT CCTGGGTGAC AGCAAAGCCA CCCTCCGGAA GCACAGCCGC GTGCACCAGT 1081 CGGAGCATCC TGAGAAGTGC TCGGAATGCA GCTACTCCTG CTCCAGCAAG GCCGCCCTGC 1141 GCATCCACGA GCGTATCCAC TGCACCGACC GCCCTTTCAA GTGCAACTAC TGCAGCTTCG 1201 ACACCAAACA GCCCAGCAAC CTGAGCAAGC ACATGAAGAA GTTCCACGGG GACATGGTTA 1261 AGACTGAGGC TCTAGAGAGG AAGGACACCG GCAGGCAGAG CAGCCGGCAG GTGGCCAAGC 1321 TGGATGCCAA GAAGAGTTTC CACTGCGATA TATGCGATGC CTCCTTCATG CGGGAGGACT 1381 CGCTCCGCAG CCACAAGAGA CAGCACAGTG AGTACAATGA GAGTAAGAAC TCGGACGTGA 1441 CCGTTCTCCA GTTTCAGATC GACCCCAGCA AGCAGCCCGC CACGCCCCTC ACTGTGGGAC 1501 ACCTCCAGGT GCCCCTCCAG CCCAGCCAAG TGCCCCAGTT CAGCGAGGGA AGAGTCAAAA 1561 TCATCGTTGG GCATCAGGTG CCCCAGGCGA ACACCATCGT CCAGGCTGCC GCTGCTGCAG 1621 TGAACATCGT CCCGCCTGCC TTGGTGGCCC AGAACCCAGA GGAACTCCCA GGGAACAGCC 1681 GGCTGCAGAT CCTGCGCCAG GTCAGTCTGA TCGCCCCCCC TCAGTCCTCG CGGTGTCCGA 1741 GCGAGGCGGG CGCAATGACC CAGCCGGCTG TCCTGCTGAC CACCCACGAG CAGACGGACG 1801 GAGCCACTCT GCACCAGACT CTCATCCCCA CGGCCTCAGG TGGCCCCCAG GAAGGCTCTG 1861 GCAATCAAAC TTTCATTACC AGTTCGGGTA TTACTTGCAC TGACTTTGAA GGCCTAAACG 1921 CCTTGATTCA GGAGGGGACA GCAGAAGTGA CAGTGGTGAG CGATGGAGGC CAGAACATCG 1981 CAGTGGCCAC CACAGCGCCA CCGGTCTTCT CCTCCTCTTC CCAGCAAGAA CTACCCAAGC 2041 AGACCTACTC CATCATTCAA GGGGCAGCCC ATCCAGCTTT GCTCTGTCCC GCCGACTCCA 2101 TTCCAGATTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 2161 tttgttgcaa cgaac