Construct: ORF ccsbBroadEn_08609

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004107.1_s300c1, BRDN0000395803
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BIN3 (55909)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55909 BIN3 bridging integrator 3 NM_018688.6 99.8% 100% 6C>T
2 human 55909 BIN3 bridging integrator 3 NM_001363046.1 81% 78.6% 0_1ins82;16_17ins62
3 human 55909 BIN3 bridging integrator 3 XM_011544586.2 78.6% 78.6% 0_1ins162
4 human 55909 BIN3 bridging integrator 3 XM_011544587.1 53.9% 47.8% (many diffs)
5 human 55909 BIN3 bridging integrator 3 NR_156436.1 43.4% (many diffs)
6 mouse 57784 Bin3 bridging integrator 3 NM_021328.3 87.4% 94.4% (many diffs)
7 mouse 57784 Bin3 bridging integrator 3 XM_006519330.2 76.4% 73.9% (many diffs)
8 mouse 57784 Bin3 bridging integrator 3 XM_006519331.2 72.3% 77.8% (many diffs)
9 mouse 57784 Bin3 bridging integrator 3 XM_006519332.3 72.3% 77.8% (many diffs)
10 mouse 57784 Bin3 bridging integrator 3 XM_011245124.2 45.8% 49% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
825
ORF length:
759
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG TTGGATTCCT TTTAAGATTG GGCAGCCCAA GAAACAGATT GTGCCCAAAA
121CAGTGGAGAG AGACTTTGAA AGGGAGTATG GAAAACTTCA GCAGCTGGAA GAGCAGACCC
181GGAGGCTGCA GAAAGACATG AAGAAGAGCA CCGACGCAGA CCTGGCCATG TCAAAATCTG
241CCGTGAAGAT ATCCTTGGAC TTACTCTCCA ATCCCCTCTG TGAGCAAGAC CAGGACCTTC
301TGAACATGGT GACGGCCCTG GACACGGCCA TGAAGCGGAT GGATGCCTTC AATCAGGAAA
361AGGTGAACCA GATCCAGAAG ACTGTGATCG AGCCCTTAAA AAAGTTCGGC AGTGTCTTCC
421CGAGCCTCAA CATGGCTGTG AAGAGGCGGG AACAGGCCTT GCAGGACTAC AGGAGGCTGC
481AGGCCAAGGT GGAGAAGTAT GAGGAAAAGG AGAAGACGGG GCCAGTGCTG GCCAAGCTCC
541ACCAGGCACG AGAGGAGCTG CGGCCTGTGC GGGAGGACTT TGAAGCCAAG AACAGGCAGC
601TGCTGGAGGA GATGCCGCGC TTCTACGGCA GCCGCCTCGA CTACTTCCAG CCCAGCTTTG
661AGTCCCTCAT CCGAGCTCAG GTTGTGTACT ACTCGGAAAT GCACAAGATC TTTGGAGACC
721TGTCCCATCA GCTTGACCAG CCAGGCCACT CCGATGAGCA GCGGGAGCGG GAGAACGAGG
781CCAAACTCAG TGAGCTCCGG GCCCTCTCCA TTGTGGCCGA TGACTGCCCA ACTTTCTTGT
841ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)