Construct: ORF ccsbBroadEn_08620

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010394.1_s300c1, BRDN0000394845
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHGB1 (56104)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56104 PCDHGB1 protocadherin gamma subfami... NM_032095.1 99.9% 100% 1530G>T;1566C>T
2 human 56104 PCDHGB1 protocadherin gamma subfami... NM_018922.2 86.7% 86.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2499
ORF length:
2430
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCAGAGAGCC AGAGAAGCCG AAATGATGAA AAGTCAGGTA CTGTTTCCCT
121TCCTGCTGTC TTTGTTCTGC GGGGCCATCT CCCAGCAGAT CCGATACACG ATTCCAGAGG
181AGCTAGCCAA CGGCTCACGG GTGGGGAAAC TTGCCAAGGA TCTGGGGCTC AGTGTCCGGG
241AGTTGCCAAC TCGAAAACTG CGGGTTAGTG CAGAGGATTA TTTCAACGTT AGTTTGGAGA
301GCGGGGATTT GTTAGTGAAC GGTAGGATAG ATCGAGAGAA GATTTGCGGA AGGAAACTTG
361AGTGTGCACT AGAATTCGAA ACGGTCGCTG AAAACCCAAT GAATGTTTTC CACGTGGTTG
421TTGTAATCCA AGATATTAAT GACAATGCAC CACGTTTCGT TGCAAAAGGC ATTGACTTAG
481AAATTTGTGA GTCAGCCTTA CCCGGGGTAA AATTCTCTCT GGATTCTGCT CAAGATGCAG
541ATGTGGAAGG CAATTCACTG AAGTTATACA CCATCAACCC CAATCAATAC TTCTCTCTGT
601CAACGAAGGA AAGTCCTGAT GGAAGTAAAT ATCCGGTATT ACTGCTGGAA AAACCTCTAG
661ACAGGGAACA TCAGAGCTCT CATCGCTTAA TCCTGACTGC CATGGATGGC GGGGACCCGC
721CTCTAAGCGG CACCACCCAT ATCTGGATCC GAGTTACGGA TGCCAATGAT AATGCTCCCG
781TGTTTAGCCA GGAGGTATAC AGGGTTAGCC TCCAAGAAAA CGTACCGTGG GGAACCTCCG
841TGCTGCGGGT GATGGCCACA GACCAGGATG AGGGCATTAA TGCAGAGATC ACCTATGCCT
901TCCTCAATTC CCCAATAAGT ACCAGCCTCT TCAATCTCAA TCCAAATACT GGCGACATCA
961CAACCAATGG CACATTGGAT TTTGAAGAGA CAAGTAGATA TGTGTTGAGT GTGGAAGCTA
1021AGGATGGAGG AGTACACACA GCTCACTGTA ATGTTCAAAT AGAAATTGTT GACGAGAATG
1081ACAATGCCCC AGAGGTGACA TTCATGTCCT TCTCTAACCA GATTCCAGAG GATTCAGACC
1141TTGGAACTGT AATAGCCCTC ATAAAAGTGC GAGACAAGGA TTCTGGGCAA AATGGCATGG
1201TGACATGCTA TACTCAGGAA GAAGTTCCTT TCAAATTAGA ATCCACCTCG AAGAATTATT
1261ACAAGCTGGT GATTGCTGGA GCCCTAAACC GGGAGCAGAC AGCAGACTAC AACGTCACAA
1321TCATAGCCAC CGACAAGGGC AAACCAGCCC TTTCCTCCAG GACAAGCATC ACCCTGCACA
1381TCTCCGACAT CAACGACAAT GCACCTGTTT TCCATCAGGC CTCCTATGTG GTCCACGTGT
1441CTGAGAACAA CCCACCTGGC GCCTCCATTG CACAAGTAAG CGCCTCCGAC CCGGATTTGG
1501GACCCAACGG CAGAGTCTCC TACTCTATTC TGGCCAGTGA CCTGGAGCCG CGGGAGCTGT
1561TGTCCTACGT GTCCGTGAGC CCGCAGAGCG GGGTGGTTTT CGCGCAGCGC GCCTTCGACC
1621ACGAGCAGCT GCGTGCCTTC GAGCTCACAC TGCAGGCCAG GGACCAGGGC TCCCCCGCGC
1681TCAGCGCCAA CGTGAGCCTG CGCGTGTTGG TGGGCGACCT CAATGACAAT GCGCCACGGG
1741TGCTGTACCC CGCGCTGGGG CCTGATGGCT CCGCCCTCTT CGATATGGTG CCACGCGCCG
1801CAGAGCCCGG CTACCTGGTG ACCAAGGTGG TGGCGGTGGA CGCAGACTCA GGACACAACG
1861CTTGGCTGTC CTACCACGTG CTGCAGGCCA GCGAGCCCGG GCTCTTCAGC CTGGGGTTGC
1921GCACGGGTGA GGTGCGCACA GCGCGTGCCT TGGGCGACAG GGACGCGGCC CGCCAGCGCC
1981TGCTGGTCGC TGTGCGTGAT GGAGGACAGC CGCCACTCTC CGCCACCGCC ACGCTGCACC
2041TAATCTTCGC GGATAGCCTG CAAGAGGTAT TGCCAGACCT CAGCGACCGC CCTGAGCCCT
2101CTGACCCCCA GACGGAACTG CAGTTTTACC TGGTTGTGGC CTTGGCCTTG ATCTCAGTGC
2161TCTTTCTCCT CGCGGTGATT CTAGCGATCG CCCTGCGCCT GCGACGTTCC TCCAGCCTCG
2221ACACTGAGGG CTGCTTTCAA ACCGGTCTCT GCTCCAAGTC TGGGCCCGGG GTTCCTCCCA
2281ACCACAGCGA GGGGACTTTG CCCTATTCCT ACAATCTATG TATTGCCTCT CATTCTGCAA
2341AGACAGAGTT TAATTCTCTC AACCTGACAC CGGAAATGGC TCCCCCTCAG GATCTGCTGT
2401GTGATGATCC TTCTATGGTT GTATGTGCCA GTAATGAAGA TCACAAAATC GCTTATGACC
2461CTTCTTTGTC TTCGCACGTG AGTTTCTGCA AATCTAGTTT GCCAACTTTC TTGTACAAAG
2521Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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