Construct: ORF ccsbBroadEn_08630

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006714.1_s300c1, BRDN0000457161
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHA11 (56138)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56138 PCDHA11 protocadherin alpha 11 NM_031861.2 99.9% 100% 1407A>G
2 human 56138 PCDHA11 protocadherin alpha 11 NM_018902.4 84.9% 84.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2499
ORF length:
2430
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTTGGTTTT CAGAGAAGGG GATTGGGCAC CCCACGACTA CAGCTCTGGC
121TTCTCCTCCT CGAATTCTGG GAGGTGGGGA GCGGCCAGCT CCACTACTCC GTCTCGGAGG
181AGGCCAAACA CGGCACCTTC GTGGGCCGCA TCGCGCAGGA CCTGGGGCTG GAGCTGGCGG
241AGCTGGTGCA GCGCCTGTTC CGGGTGGCGT CCAAAACACA TGGGGACCTT CTGGAGGTAA
301ATCTGCAGAA TGGCATTTTG TTTGTGAATT CTCGGATCGA CCGCGAGGAG CTGTGCGGGC
361AGAGCGCGGA GTGCAGCATC CACCTGGAGG TGATCGTGGA CAGGCCGCTG CAGGTTTTCC
421ATGTGAACGT GGAGGTGAAG GACATTAACG ACAACCCGCC GGTGTTCTCG CTCAGAGAAC
481AAAAGCTGCT GATTGCGGAA TCTAAGCAAT CGGACTCGCG TTTTCCACTA GAGGGAGCTT
541CTGATGCTGA CATTGAAGAG AATGCTCTAT TGACCTACAG GCTAAGTAAA AATGAGTATT
601TTTCTTTAGA TTCACCAACA AATGGTAAGC AGATTAAAAG ACTGTCACTT ATTTTAAAGA
661AGTCTCTGGA TAGAGAGAAA ACTCCGGAAC TTAATTTGCT GCTAACAGCT ACAGACGGGG
721GAAAACCAGA GCTTACTGGC ACCGTTCGGC TGTTAGTCCA AGTCTTGGAT GTCAACGACA
781ATGATCCAGA GTTTGATAAA TCAGAATATA AGGTGAGCCT TATGGAAAAT GCTGCTAAAG
841AAACTCTTGT GCTCAAACTA AACGCCACAG ACCGAGACGA AGGAGTCAAT GGAGAGGTAA
901CATACTCCTT AATGTCAATT AAGCCCAATG GAAGACACTT ATTTACACTA GATCAAAATA
961ATGGAGAAGT GAGGGTCAAT GGAACTTTAG ATTATGAAGA AAACAAGTTT TATAAAATTG
1021AAGTACAGGC TACAGATAAG GGGACTCCCC CAATGGCAGG TCACTGTACA GTCTGGGTGG
1081AAATCTTGGA CACCAACGAT AACTCTCCTG AAGTCGCCGT GACTTCCTTG TCCCTCCCAG
1141TACGAGAGGA CGCTCAGCCC AGCACGGTCA TTGCCCTGAT CAGCGTGTCT GACCGTGACT
1201CAGGTGTCAA CGGACAGGTG ACCTGCTCGC TGACGCCCCA CGTTCCCTTC AAGCTGGTGT
1261CCACCTTCAA GAATTACTAC TCGTTGGTGC TGGACAGCGC CCTGGACCGC GAGAACGTGT
1321GGGCCTATGA ACTGGTGGTG ACTGCGCGGG ATGGGGGTTC GCCTTCTCTG TGGGCCACGG
1381CCAGGGTATC CGTGGAGGTG GCCGACGTGA ACGACAATGC GCCTGCGTTC GCACAGCCCG
1441AGTACACCGT GTTCGTGAAG GAGAACAACC CACCGGGCTG CCACATCTTC ACAGTGTCGG
1501CGCGGGACGC GGACGCGCAG GAGAACGCGC TGGTGTCCTA CTCGCTGGTG GAGCGGCGGT
1561TGGGCGACCG CGCGCTGTCG AGCTACGTGT CGGTGCACGC GGAGAGCGGC AAGGTGTACG
1621CGCTGCAGCC GTTGGACCAC GAGGAGCTGG AGCTGCTACA GTTCCAGGTG AGCGCGCGCG
1681ATGCGGGCGT GCCGCCTCTG AGCAGCAACG TGACGCTGCA GGTGTTCGTG CTGGACGAGA
1741ACGACAACGC GCCGGCACTG CTGGCGACTC AGGCTGGCAG CGCGGGAGGC GCAGTTAACA
1801AGCTAGTACC GCGGTCGGTG GGTGCGGGCC ACGTGGTGGC GAAGGTGCGC GCAGTGGATG
1861CGGACTCAGG CTACAACGCG TGGCTTTCAT ATGAATTGCA GCCGGCGGCG GGCGGCTCGC
1921GCATCCCGTT CCGCGTGGGG CTGTACACGG GCGAGATAAG CACAACGCGT GCCCTGGACG
1981AGGCAGACTC GCCGCGCCAC CGACTTCTAG TACTGGTGAA GGATCACGGT GAGCCGGCGC
2041TGACGGCCAC GGCCACCGTG CTGGTGTCGT TGGTGGAGAG CGGACAGGCG CCAAAGGCCT
2101CTTCCCGGAC TTTGGCGGGC GCCGCGAGCC CAGAGGCTGC GCTGGTGGAT GTCAACGTGT
2161ACCTGATCAT CGCCATCTGC GTGGTGTCCA GCCTCCTGGT ACTCACGCTG CTGCTGTATA
2221CGGCGCTGTG GTGGTCGGCA ACGCCCACTG AGGGCGCGTG CGCGCCGGGG AAGCCCACGC
2281TGGTGTGCTC CCGCGCGGTG GGGAGCTGGT CATACTCGCA GCAGAGGCGG CAGAGGGTGT
2341GCTCTGAGGA GGGCCCACCT AAGACGGACC TCATGGCCTT CAGCCCCAGT CTTCCTCTAG
2401GTCTGAATAA AGAGGAGGAA GGGGAAAGAC AGGAGCCAGG GTCAAATCAC CCCGGACAGG
2461TGAGTTTTCT ACAGATTCCA CCTATCAGGA AGTGTATGTT GCCAACTTTC TTGTACAAAG
2521TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)