Construct: ORF ccsbBroadEn_08643

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011458.1_s300c1, BRDN0000395943
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC2A9 (56606)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56606 SLC2A9 solute carrier family 2 mem... NM_001001290.1 99.6% 99.6% (many diffs)
2 human 56606 SLC2A9 solute carrier family 2 mem... NM_020041.3 91.7% 91.4% (many diffs)
3 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513859.3 91% 90.2% (many diffs)
4 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513860.3 90.9% 90.3% (many diffs)
5 human 56606 SLC2A9 solute carrier family 2 mem... XM_006713968.4 86.3% 86.5% (many diffs)
6 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513857.1 83.1% 77.4% (many diffs)
7 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513858.1 83.1% 77.4% (many diffs)
8 human 56606 SLC2A9 solute carrier family 2 mem... XM_017008457.2 81.2% 80.4% (many diffs)
9 human 56606 SLC2A9 solute carrier family 2 mem... XM_006713969.2 81.2% 78.9% (many diffs)
10 human 56606 SLC2A9 solute carrier family 2 mem... XM_017008458.2 81.1% 78.4% (many diffs)
11 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513861.3 81% 78.6% (many diffs)
12 human 56606 SLC2A9 solute carrier family 2 mem... XM_017008460.2 78.3% 78.8% (many diffs)
13 human 56606 SLC2A9 solute carrier family 2 mem... XM_024454152.1 77.1% 70.1% (many diffs)
14 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513856.3 77.1% 71.4% (many diffs)
15 human 56606 SLC2A9 solute carrier family 2 mem... XM_024454150.1 75.9% 70% (many diffs)
16 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513865.2 74.4% 72% (many diffs)
17 human 56606 SLC2A9 solute carrier family 2 mem... XM_024454153.1 72.6% 71.1% (many diffs)
18 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513866.2 72.3% 70.8% (many diffs)
19 human 56606 SLC2A9 solute carrier family 2 mem... XR_925341.3 71.5% (many diffs)
20 human 56606 SLC2A9 solute carrier family 2 mem... XM_024454151.1 66.3% 60.7% (many diffs)
21 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513868.2 65.8% 60.3% (many diffs)
22 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513864.2 65.1% 59.3% (many diffs)
23 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513862.3 64.7% 59.5% (many diffs)
24 human 56606 SLC2A9 solute carrier family 2 mem... XM_017008459.1 62.1% 56.5% (many diffs)
25 human 56606 SLC2A9 solute carrier family 2 mem... XM_011513867.3 56.7% 51% (many diffs)
26 human 56606 SLC2A9 solute carrier family 2 mem... XR_001741291.1 40.5% (many diffs)
27 human 56606 SLC2A9 solute carrier family 2 mem... XR_001741290.1 27.7% (many diffs)
28 mouse 117591 Slc2a9 solute carrier family 2 (fa... NM_001012363.2 79.1% 82.1% (many diffs)
29 mouse 117591 Slc2a9 solute carrier family 2 (fa... XM_006503683.3 79.1% 82.1% (many diffs)
30 mouse 117591 Slc2a9 solute carrier family 2 (fa... XM_006503684.3 79.1% 82.1% (many diffs)
31 mouse 117591 Slc2a9 solute carrier family 2 (fa... XM_006503685.3 79.1% 82.1% (many diffs)
32 mouse 117591 Slc2a9 solute carrier family 2 (fa... XM_011240688.2 79.1% 82.1% (many diffs)
33 mouse 117591 Slc2a9 solute carrier family 2 (fa... XM_011240689.2 79.1% 82.1% (many diffs)
34 mouse 117591 Slc2a9 solute carrier family 2 (fa... XM_011240690.1 79.1% 82.1% (many diffs)
35 mouse 117591 Slc2a9 solute carrier family 2 (fa... NM_145559.2 62.3% 64.9% (many diffs)
36 mouse 117591 Slc2a9 solute carrier family 2 (fa... XM_006503686.3 62.3% 64.9% (many diffs)
37 mouse 117591 Slc2a9 solute carrier family 2 (fa... XM_006503687.3 62.3% 64.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1599
ORF length:
1533
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT GCTCAGTAAA AAGGACCGAG GAGAAGATGA AGAAAGTGAT TCAGCGAAAA
121AGAAATTGGA CTGGTCCTGC TCGCTCCTCG TGGCCTCCCT CGCGGGCGCC TTCGGCTCCT
181CCTTCCTCTA CGGCTACAAC CTGTCGGTGG TGAATGCCCC CACCCCGTAC ATCAAGGCCT
241TTTACAATGA GTCATGGGAA AGAAGGCATG GACGTCCAAT AGACCCAGAC ACTCTGACTC
301TGCTCTGGTC TGTGACTGTG TCCATATTCG CCATCGGTGG ACTTGTGGGG ACATTAATTG
361TGAAGATGAT TGGAAAGGTT CTTGGGAGGA AGCACACTTT GCTGGCCAAT AATGGGTTTG
421CAATTTCTGC TGCATTGCTG ATGGCCTGCT CGCTCCAGGC AGGAGCCTTT GAAATGCTCA
481TCGTGGGACG CTTCATCATG GGCATAGATG GAGGCGTCGC CCTCAGTGTG CTCCCCATGT
541ACCTCAGTGA GATCTCACCC AAGGAGATCC GTGGCTCTCT GGGGCAGGTG ACTGCCATCT
601TTATCTGCAT TGGCGTGTTC ACTGGGCAGC TTCTGGGCCT GCCCGAGCTG CTGGGAAAGG
661AGAGTACCTG GCCATACCTG TTTGGAGTGA TTGTGGTCCC TGCCGTTGTC CAGCTGCTGA
721GCCTTCCCTT TCTCCCGGAC AGCCCACGCT ACCTGCTCTT GGAGAAGCAC AACGAGGCAA
781GAGCTGTGAA AGCCTTCCAA ACGTTCTTGG GTAAAGCAGA CGTTTCCCAA GAGGTAGAGG
841AGGTCCTGGC TGAGAGCCGC GTGCAGAGGA GCATCCGCCT GGTGTCCGTG CTGGAGCTGC
901TGAGAGCTCC CTACGTCCGC TGGCAGGTGG TCACCGTGAT TGTCACCATG GCCTGCTACC
961AGCTCTGTGG CCTCAATGCA ATTTGGTTCT ATACCAACAG CATCTTTGGA AAAGCTGGGA
1021TCCCTCTGGC AAAGATCCCA TACGTCACCT TGAGTACAGG GGGCATCGAG ACTTTGGCTG
1081CCGTCTTCTC TGGTTTGGTC ATTGAGCACC TGGGACGGAG ACCCCTCCTC ATTGGTGGCT
1141TTGGGCTCAT GGGCCTCTTC TTTGGGACCC TCACCATCAC GCTGACCCTG CAGGACCACG
1201CCCCCTGGGT CCCCTACCTG AGTATCGTGG GCATTCTGGC CATCATCGCC TCTTTCTGCA
1261GTGGGCCAGG TGGCATCCCG TTCATCTTGA CTGGTGAGTT CTTCCAGCAA TCTCAGCGGC
1321CGGCTGCCTT CATCATTGCA GGCACCGTCA ACTGGCTCTC CAACTTTGCT GTTGGGCTCC
1381TCTTCCCATT CATTCAGAAA AGTCTGGACA CCTACTGTTT CCTAGTCTTT GCTACAATTT
1441GTATCACAGG TGCTATCTAC CTGTATTTTG TGCTGCCTGA GACCAAAAAC AGAACCTATG
1501CAGAAATCAG CCAGGCATTT TCCAAAAGGA ACAAAGCATA CCCACCAGAA GAGAAAATCG
1561ACTCAGCTGT CACTGATGGT AAGATAAATG GAAGGCCTTA CCCAACTTTC TTGTACAAAG
1621Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)