Construct: ORF ccsbBroadEn_08737
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012834.1_s300c1, BRDN0000457398
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF608 (57507)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57507 | ZNF608 | zinc finger protein 608 | NM_020747.2 | 99.9% | 99.8% | 1314G>A;2038A>C;2162C>A |
| 2 | human | 57507 | ZNF608 | zinc finger protein 608 | XM_005272037.3 | 99.9% | 99.8% | 1314G>A;2038A>C;2162C>A |
| 3 | human | 57507 | ZNF608 | zinc finger protein 608 | XM_005272038.2 | 99.9% | 99.8% | 1314G>A;2038A>C;2162C>A |
| 4 | human | 57507 | ZNF608 | zinc finger protein 608 | XM_005272039.3 | 99.8% | 99.8% | (many diffs) |
| 5 | human | 57507 | ZNF608 | zinc finger protein 608 | XM_011543520.3 | 94.6% | 94.5% | (many diffs) |
| 6 | human | 57507 | ZNF608 | zinc finger protein 608 | XM_005272040.4 | 80.5% | 80% | (many diffs) |
| 7 | human | 57507 | ZNF608 | zinc finger protein 608 | XM_011543522.3 | 79.9% | 79.8% | (many diffs) |
| 8 | human | 57507 | ZNF608 | zinc finger protein 608 | XM_011543523.2 | 74.4% | 74.3% | (many diffs) |
| 9 | human | 57507 | ZNF608 | zinc finger protein 608 | XR_246536.4 | 71.2% | (many diffs) | |
| 10 | human | 57507 | ZNF608 | zinc finger protein 608 | XR_001742165.2 | 70.7% | (many diffs) | |
| 11 | mouse | 269023 | Zfp608 | zinc finger protein 608 | NM_175751.4 | 89.8% | 93% | (many diffs) |
| 12 | mouse | 269023 | Zfp608 | zinc finger protein 608 | XM_006525957.3 | 89.8% | 93% | (many diffs) |
| 13 | mouse | 269023 | Zfp608 | zinc finger protein 608 | XM_006525958.3 | 72% | 75.2% | (many diffs) |
| 14 | mouse | 269023 | Zfp608 | zinc finger protein 608 | XM_006525959.3 | 71.4% | 75% | (many diffs) |
| 15 | mouse | 269023 | Zfp608 | zinc finger protein 608 | XM_006525961.3 | 66.8% | 69.9% | (many diffs) |
| 16 | mouse | 269023 | Zfp608 | zinc finger protein 608 | XM_006525962.3 | 66.4% | 69.7% | (many diffs) |
| 17 | mouse | 269023 | Zfp608 | zinc finger protein 608 | XM_006525963.3 | 63.6% | 67% | (many diffs) |
| 18 | mouse | 269023 | Zfp608 | zinc finger protein 608 | XR_001782370.1 | 57.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4605
- ORF length:
- 4536
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCAGTGAAC ATTTCTACTG CAGGAAAAGG TGTGGATCCA AATACAGTTG 121 ATACTTATGA CAGTGGCGAT GATTGGGAAA TCGGGGTTGG AAATTTAATA ATTGATTTGG 181 ACGCTGATTT GGAGAAGGAC AGACAGAAAT TTGAGATGAA TAATTCCACC ACCACCACTA 241 GTAGCAGCAA CTCCAAGGAT TGTGGAGGTC CGGCCTCCAG TGGGGCTGGT GCTACCGCAG 301 CCTTAGCTGA TGGCCTAAAA TTTGCTTCTG TTCAGGCCTC TGCTCCCCAG GGGAATTCAC 361 ACAAAGAGAC CAGCAAATCA AAAGTGAAAA GGAGTAAAAC TTCTAAGGAT GCTAATAAAT 421 CTCTGCCTTC TGCTGCCTTG TATGGGATTC CCGAGATCAG CAGCACTGGC AAGAGGCAGG 481 AAGTCCAAGG GCGCCCTGGA GAGGCAACTG GCATGAATTC AGCGCTGGGT CAAAGTGTGA 541 GCAGCGGCGG CAGCGGCAAC CCAAACAGCA ATAGTACCAG CACCAGCACC TCTGCCGCCA 601 CCGCGGGGGC AGGCTCCTGT GGGAAAAGCA AAGAGGAGAA GCCAGGTAAA AGCCAGAGCA 661 GCCGAGGCGC CAAGCGGGAT AAGGATGCGG GGAAATCCAG GAAGGACAAG CACGACCTGC 721 TTCAGGGCCA CCAGAATGGC AGTGGCAGCC AGGCCCCTTC CGGGGGGCAC CTCTATGGCT 781 TTGGGGCCAA GAGCAATGGA GGTGGCGCGA GCCCCTTCCA CTGCGGGGGC ACTGGGAGTG 841 GCAGCGTCGC CGCTGCAGGG GAAGTTAGCA AAAGTGCCCC GGATTCAGGG CTCATGGGAA 901 ACTCTATGTT GGTAAAGAAG GAAGAGGAGG AGGAGGAGAG CCACAGGCGA ATCAAGAAAC 961 TGAAAACTGA GAAGGTTGAC CCCCTGTTTA CAGTGCCAGC GCCACCACCG CCGATTTCCA 1021 GCAGTCTCAC GCCTCAGATT CTACCCTCCT ACTTTTCCCC ATCTTCATCC AATATTGCAG 1081 CACCGGTTGA ACAGCTTTTG GTTCGGACTC GTTCTGTGGG TGTCAATACA TGTGAAGTTG 1141 GAGTAGTGAC AGAGCCAGAG TGTCTTGGGC CCTGTGAACC TGGGACCAGT GTGAATTTGG 1201 AAGGGATCGT GTGGCATGAA ACAGAAGAAG GTGTCCTAGT GGTCAATGTC ACGTGGAGGA 1261 ACAAAACGTA CGTGGGAACC CTACTGGACT GCACCAAGCA CGACTGGGCC CCTCCCAGGT 1321 TTTGTGAGTC ACCGACAAGT GACCTGGAGA TGAGAGGGGG CCGGGGCAGA GGGAAGAGAG 1381 CAAGGTCTGC TGCTGCTGCC CCGGGCTCCG AGGCCAGCTT CACAGAGTCC AGAGGGCTGC 1441 AGAATAAGAA CAGAGGGGGG GCCAATGGGA AAGGGAGGCG GGGCAGCCTC AATGCCAGCG 1501 GACGAAGGAC ACCCCCAAAT TGTGCTGCTG AGGATATCAA AGCCAGCCCT TCCTCCACCA 1561 ACAAAAGGAA AAACAAGCCT CCAATGGAGC TGGACCTGAA CTCCAGCTCT GAGGACAATA 1621 AGCCTGGAAA GCGTGTCCGC ACAAATTCCA GAAGCACTCC CACTACCCCT CAAGGGAAAC 1681 CAGAGACTAC TTTTTTGGAC CAAGGCTGCT CTTCTCCAGT GTTAATCGAC TGTCCCCACC 1741 CAAACTGCAA CAAAAAGTAC AAGCACATTA ACGGCCTGAG GTACCACCAG GCTCATGCAC 1801 ACTTAGACCC AGAAAACAAG CTGGAGTTCG AGCCTGACAG TGAGGACAAG ATCTCGGACT 1861 GTGAGGAAGG ATTGAGTAAT GTGGCACTTG AATGCAGTGA GCCAAGCACA AGTGTATCTG 1921 CTTATGACCA GTTGAAGGCA CCGGCATCCC CTGGTGCTGG AAACCCACCT GGGACCCCAA 1981 AGGGAAAGAG AGAGCTGATG AGCAATGGCC CAGGTTCCAT TATTGGTGCT AAAGCTGGGA 2041 AGAATTCTGG CAAAAAGAAG GGCCTTAACA ATGAACTGAA CAACCTTCCA GTAATCTCCA 2101 ACATGCCGGC TGCGTTAGAC AGTTGCTCGG CAGCAGACGG CAGTTTGGCT GCTGAGATGC 2161 CTAAACTGGA AGCAGAAGGA TTAATTGACA AGAAAAATTT AGGAGATAAA GAAAAGGGCA 2221 AAAAAGCTAA CAACTGCAAA ACGGACAAAA ACCTCTCTAA ACTGAAAAGT GCCCGGCCCA 2281 TTGCCCCTGC CCCAGCCCCC ACTCCCCCGC AGCTAATCGC TATACCCACT GCAACCTTTA 2341 CAACGACCAC CACTGGGACA ATACCCGGAC TGCCCTCCCT CACAACAACT GTTGTTCAGG 2401 CTACACCAAA GAGTCCTCCG TTAAAACCCA TTCAACCAAA GCCCACAATT ATGGGAGAGC 2461 CCATCACCGT GAACCCAGCT CTGGTGTCAC TCAAAGACAA AAAGAAAAAG GAGAAGCGAA 2521 AGCTAAAGGA CAAAGAAGGG AAAGAGACGG GAAGCCCAAA AATGGATGCC AAGCTGGGGA 2581 AACTAGAGGA CTCCAAGGGG GCCAGCAAAG ATTTACCTGG GCATTTTTTA AAGGATCATC 2641 TCAACAAGAA TGAAGGGCTG GCAAATGGAC TGTCGGAGTC TCAGGAGAGC CGCATGGCCA 2701 GTATCAAAGC TGAGGCCGAT AAGGTTTACA CTTTCACAGA CAACGCTCCC AGCCCTTCCA 2761 TAGGGAGCGC CTCGAGGCTG GAATGCAGCA CTTTGGTGAA CGGGCAGGCA CCAATGGCAC 2821 CTCTGCATGT GTTGACCCAG AATGGGGCAG AGAGTTCAGC TGCAAAGACA AGCAGCCCGG 2881 CCTATTCAGA CATATCTGAT GCTGCTGACG ATGGTGGTTC TGACAGCAGG TCGGAGGGTA 2941 TGAGATCAAA GGCCAGTTCC CCATCAGATA TTATTTCTAG TAAGGACAGT GTTGTAAAAG 3001 GGCATTCTTC AACTACAGCA CAATCATCTC AACTGAAAGA GTCCCATTCT CCCTATTACC 3061 ACAGCTATGA TCCTTATTAT TCTCCAAGTT ACATGCACCC TGGGCAGGTC GGTGCCCCTG 3121 CAGCTGGAAA TAGTGGGAGC ACGCAGGGAA TGAAGATCAA GAAGGAGTCT GAGGAAGATG 3181 CTGAAAAGAA AGACAAGGCA GAGCAGTTAG ATTCTAAGAA AGTGGACCAC AATTCTGCAT 3241 CCTTACAGCC TCAGCACCAG TCGGTGATCA CACAAAGACA TCCTGCCCTG GCTCAGTCAC 3301 TTTATTATGG CCAGTATGCA TATGGGCTCT ATATGGACCA GAAGTCTCTG ATGGCCACCA 3361 GCCCTGCCTA TAGACAGCAG TATGAGAAGT ACTATGAGGA CCAGAGGCTG GCAGAGCAGA 3421 AAATGGCCCA GACTGGGAGA GGAGACTGTG AAAGGAAAAG TGAGCTCCCC TTGAAAGAGC 3481 TGGGCAAGGA GGAAACTAAA CAGAAAAATA TGCCATCGGC CACAATCTCA AAAGCTCCCT 3541 CTACTCCGGA GCCTAACAAA AACCATTCTA AACTAGGGCC ATCAGTGCCT AATAAAACTG 3601 AGGAGACAGG TAAATCGCAG CTTCTCTCCA ATCACCAGCA GCAGCTTCAG GCCGACAGCT 3661 TCAAAGCTAA GCAGATGGAA AACCACCAGC TTATTAAGGA GGCTGTAGAA ATGAAGTCTG 3721 TCATGGACTC TATGAAGCAG ACAGGTGTAG ACCCAACCTC GAGATTTAAA CAAGACCCAG 3781 ATTCAAGAAC ATGGCATCAT TATGTATACC AGCCCAAATA TCTGGATCAG CAAAAGTCAG 3841 AAGAACTTGA TAGAGAGAAG AAATTAAAAG AGGATAGTCC GAGGAAAACT CCTAATAAAG 3901 AGAGTGGTGT GCCCAGCCTT CCTGTATCGT TAACAAGCAT TAAAGAGGAG CCCAAAGAGG 3961 CCAAGCATCC TGATTCTCAA TCAATGGAGG AGAGCAAGCT GAAAAATGAT GATCGAAAGA 4021 CTCCTGTGAA CTGGAAGGAC TCTCGGGGAA CAAGAGTGGC TGTCTCCTCA CCCATGAGTC 4081 AGCATCAGTC ATACATACAG TACTTGCATG CTTATCCTTA CCCACAGATG TACGACCCCA 4141 GCCATCCTGC ATACCGGGCT GTTTCTCCCG TCCTAATGCA CAGTTATCCT GGGGCATATC 4201 TCTCTCCAGG ATTTCATTAT CCTGTTTATG GGAAGATGTC AGGGAGAGAA GAGACAGAGA 4261 AAGTCAATAC CAGCCCTAGC GTCAACACGA AAACAACCAC TGAATCTAAA GCACTGGATT 4321 TGCTCCAGCA GCATGCTAAC CAATACCGCA GCAAGTCTCC TGCTCCTGTG GAAAAGGCTA 4381 CAGCTGAGCG GGAACGGGAG GCAGAAAGGG AAAGGGATCG CCACTCCCCC TTCGGCCAGC 4441 GGCACCTGCA CACGCACCAC CACACCCACG TTGGCATGGG TTACCCGCTA ATCCCGGGTC 4501 AATATGACCC TTTTCAAGGC TTGACCTCTG CTGCCCTTGT TGCCTCTCAG CAGGTGGCTG 4561 CCCAGGCATC TGCATCTGGA ATGTTTCCTG GACAAAGAAG AGAATTGCCA ACTTTCTTGT 4621 ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c