Construct: ORF ccsbBroadEn_08742

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007844.1_s300c1, BRDN0000389859
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF398 (57541)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57541 ZNF398 zinc finger protein 398 NM_170686.3 99.9% 100% 201G>A
2 human 57541 ZNF398 zinc finger protein 398 XM_011516440.2 98.7% 98.7% 1_2delATins23;180G>A
3 human 57541 ZNF398 zinc finger protein 398 XM_011516439.2 97.7% 97.6% (many diffs)
4 human 57541 ZNF398 zinc finger protein 398 NM_020781.4 73.3% 73.3% 0_1ins513
5 human 57541 ZNF398 zinc finger protein 398 XM_011516441.2 73.3% 73.3% 0_1ins513
6 mouse 272347 Zfp398 zinc finger protein 398 NM_027477.3 87% 91.2% (many diffs)
7 mouse 272347 Zfp398 zinc finger protein 398 NM_173034.3 68.4% 70.2% (many diffs)
8 mouse 272347 Zfp398 zinc finger protein 398 XM_006506207.2 68.3% 70.9% (many diffs)
9 mouse 272347 Zfp398 zinc finger protein 398 XM_006506208.3 62.7% 65.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1992
ORF length:
1926
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGAGGCGGCC CCGGCCCCGA CATCTGAATG GGACTCCGAG TGCCTTACAT
121CCCTGCAGCC CCTTCCTCTT CCTACACCCC CAGCAGCAAA TGAGGCACAC CTGCAGACAG
181CAGCTATCTC TCTGTGGACA GTGGTGGCCG CCGTGCAGGC TATAGAGAGG AAGGTGGAGA
241TCCACAGCCG GCGACTCCTA CACCTAGAAG GTCGGACAGG GACAGCAGAG AAGAAACTAG
301CCAGCTGTGA AAAGACAGTT ACCGAGCTTG GGAACCAGCT GGAGGGCAAG TGGGCCGTGC
361TGGGAACCCT GCTGCAGGAG TACGGGCTGC TGCAGAGGCG GCTGGAGAAC TTGGAGAACC
421TGCTGCGCAA CAGGAACTTC TGGATCCTGC GGCTCCCTCC AGGTATTAAG GGAGATATCC
481CAAAGGTGCC TGTGGCATTT GATGATGTCT CCATCTACTT TTCCACTCCA GAGTGGGAAA
541AATTAGAAGA ATGGCAAAAG GAACTTTACA AGAATATCAT GAAGGGCAAC TACGAGTCTC
601TCATCTCCAT GGATTATGCT ATAAATCAAC CTGATGTCTT ATCTCAGATT CAACCAGAAG
661GGGAACATAA TACAGAGGAC CAGGCAGGGC CAGAGGAAAG TGAGATTCCC ACAGACCCCA
721GTGAAGAGCC TGGTATTTCA ACATCAGATA TTCTGTCTTG GATTAAACAA GAAGAAGAGC
781CTCAGGTTGG GGCCCCACCG GAGTCCAAGG AGAGTGACGT GTACAAAAGC ACTTATGCTG
841ATGAAGAGCT TGTCATCAAA GCTGAAGGCC TTGCTAGATC CTCGTTGTGC CCTGAGGTTC
901CAGTCCCTTT CTCTTCTCCA CCAGCAGCAG CAAAGGATGC TTTTTCAGAT GTGGCTTTCA
961AAAGCCAGCA GTCTACATCC ATGACACCTT TTGGACGTCC AGCCACTGAC CTGCCTGAAG
1021CCTCTGAGGG ACAAGTGACT TTTACTCAGT TGGGTAGCTA TCCCCTCCCA CCTCCAGTTG
1081GCGAGCAGGT GTTCTCATGC CACCACTGTG GCAAGAATCT CAGCCAAGAC ATGTTGCTGA
1141CCCACCAATG TAGCCATGCT ACTGAGCACC CCTTACCCTG TGCCCAGTGC CCTAAGCACT
1201TTACTCCACA GGCGGACCTC AGCAGCACCT CCCAGGACCA TGCCAGCGAG ACACCCCCCA
1261CCTGCCCACA CTGTGCCAGG ACTTTTACTC ACCCATCAAG ACTTACCTAC CATCTTCGGG
1321TCCATAACAG CACTGAGCGT CCTTTCCCCT GTCCTGATTG CCCCAAGCGC TTTGCTGACC
1381AGGCTCGACT CACCAGCCAC CGGAGAGCTC ATGCAAGCGA AAGGCCCTTC CGCTGTGCCC
1441AGTGCGGCAG GAGCTTCAGC TTGAAAATCA GCCTCCTGCT CCACCAGCGG GGTCATGCAC
1501AAGAGCGCCC TTTCTCCTGC CCTCAGTGTG GCATTGACTT CAACGGCCAC TCGGCCCTGA
1561TCCGCCACCA GATGATCCAC ACAGGCGAGC GTCCTTACCC CTGCACTGAC TGCAGTAAGA
1621GCTTCATGCG CAAGGAGCAC CTGCTGAACC ACCGGCGGCT GCACACAGGC GAGCGGCCCT
1681TCAGTTGTCC TCACTGTGGC AAGAGCTTCA TCCGCAAGCA CCACCTAATG AAACACCAGC
1741GCATCCACAC CGGGGAGCGG CCCTACCCCT GCTCCTACTG TGGCAGGAGC TTCCGCTACA
1801AACAGACACT CAAGGACCAC CTCCGTTCAG GCCACAATGG AGGCTGTGGG GGTGATAGTG
1861ACCCATCAGG TCAGCCACCC AACCCACCAG GTCCCCTCAT AACTGGGCTT GAAACTTCTG
1921GCCTGGGTGT CAACACTGAA GGTCTAGAGA CCAACCAGTG GTATGGGGAA GGGAGTGGAG
1981GGGGAGTTTT GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
2041caatttgttg caacgaac

Download FASTA (ORF) (Full)