Construct: ORF ccsbBroadEn_08742
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007844.1_s300c1, BRDN0000389859
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF398 (57541)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57541 | ZNF398 | zinc finger protein 398 | NM_170686.3 | 99.9% | 100% | 201G>A |
| 2 | human | 57541 | ZNF398 | zinc finger protein 398 | XM_011516440.2 | 98.7% | 98.7% | 1_2delATins23;180G>A |
| 3 | human | 57541 | ZNF398 | zinc finger protein 398 | XM_011516439.2 | 97.7% | 97.6% | (many diffs) |
| 4 | human | 57541 | ZNF398 | zinc finger protein 398 | NM_020781.4 | 73.3% | 73.3% | 0_1ins513 |
| 5 | human | 57541 | ZNF398 | zinc finger protein 398 | XM_011516441.2 | 73.3% | 73.3% | 0_1ins513 |
| 6 | mouse | 272347 | Zfp398 | zinc finger protein 398 | NM_027477.3 | 87% | 91.2% | (many diffs) |
| 7 | mouse | 272347 | Zfp398 | zinc finger protein 398 | NM_173034.3 | 68.4% | 70.2% | (many diffs) |
| 8 | mouse | 272347 | Zfp398 | zinc finger protein 398 | XM_006506207.2 | 68.3% | 70.9% | (many diffs) |
| 9 | mouse | 272347 | Zfp398 | zinc finger protein 398 | XM_006506208.3 | 62.7% | 65.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1992
- ORF length:
- 1926
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGAGGCGGCC CCGGCCCCGA CATCTGAATG GGACTCCGAG TGCCTTACAT 121 CCCTGCAGCC CCTTCCTCTT CCTACACCCC CAGCAGCAAA TGAGGCACAC CTGCAGACAG 181 CAGCTATCTC TCTGTGGACA GTGGTGGCCG CCGTGCAGGC TATAGAGAGG AAGGTGGAGA 241 TCCACAGCCG GCGACTCCTA CACCTAGAAG GTCGGACAGG GACAGCAGAG AAGAAACTAG 301 CCAGCTGTGA AAAGACAGTT ACCGAGCTTG GGAACCAGCT GGAGGGCAAG TGGGCCGTGC 361 TGGGAACCCT GCTGCAGGAG TACGGGCTGC TGCAGAGGCG GCTGGAGAAC TTGGAGAACC 421 TGCTGCGCAA CAGGAACTTC TGGATCCTGC GGCTCCCTCC AGGTATTAAG GGAGATATCC 481 CAAAGGTGCC TGTGGCATTT GATGATGTCT CCATCTACTT TTCCACTCCA GAGTGGGAAA 541 AATTAGAAGA ATGGCAAAAG GAACTTTACA AGAATATCAT GAAGGGCAAC TACGAGTCTC 601 TCATCTCCAT GGATTATGCT ATAAATCAAC CTGATGTCTT ATCTCAGATT CAACCAGAAG 661 GGGAACATAA TACAGAGGAC CAGGCAGGGC CAGAGGAAAG TGAGATTCCC ACAGACCCCA 721 GTGAAGAGCC TGGTATTTCA ACATCAGATA TTCTGTCTTG GATTAAACAA GAAGAAGAGC 781 CTCAGGTTGG GGCCCCACCG GAGTCCAAGG AGAGTGACGT GTACAAAAGC ACTTATGCTG 841 ATGAAGAGCT TGTCATCAAA GCTGAAGGCC TTGCTAGATC CTCGTTGTGC CCTGAGGTTC 901 CAGTCCCTTT CTCTTCTCCA CCAGCAGCAG CAAAGGATGC TTTTTCAGAT GTGGCTTTCA 961 AAAGCCAGCA GTCTACATCC ATGACACCTT TTGGACGTCC AGCCACTGAC CTGCCTGAAG 1021 CCTCTGAGGG ACAAGTGACT TTTACTCAGT TGGGTAGCTA TCCCCTCCCA CCTCCAGTTG 1081 GCGAGCAGGT GTTCTCATGC CACCACTGTG GCAAGAATCT CAGCCAAGAC ATGTTGCTGA 1141 CCCACCAATG TAGCCATGCT ACTGAGCACC CCTTACCCTG TGCCCAGTGC CCTAAGCACT 1201 TTACTCCACA GGCGGACCTC AGCAGCACCT CCCAGGACCA TGCCAGCGAG ACACCCCCCA 1261 CCTGCCCACA CTGTGCCAGG ACTTTTACTC ACCCATCAAG ACTTACCTAC CATCTTCGGG 1321 TCCATAACAG CACTGAGCGT CCTTTCCCCT GTCCTGATTG CCCCAAGCGC TTTGCTGACC 1381 AGGCTCGACT CACCAGCCAC CGGAGAGCTC ATGCAAGCGA AAGGCCCTTC CGCTGTGCCC 1441 AGTGCGGCAG GAGCTTCAGC TTGAAAATCA GCCTCCTGCT CCACCAGCGG GGTCATGCAC 1501 AAGAGCGCCC TTTCTCCTGC CCTCAGTGTG GCATTGACTT CAACGGCCAC TCGGCCCTGA 1561 TCCGCCACCA GATGATCCAC ACAGGCGAGC GTCCTTACCC CTGCACTGAC TGCAGTAAGA 1621 GCTTCATGCG CAAGGAGCAC CTGCTGAACC ACCGGCGGCT GCACACAGGC GAGCGGCCCT 1681 TCAGTTGTCC TCACTGTGGC AAGAGCTTCA TCCGCAAGCA CCACCTAATG AAACACCAGC 1741 GCATCCACAC CGGGGAGCGG CCCTACCCCT GCTCCTACTG TGGCAGGAGC TTCCGCTACA 1801 AACAGACACT CAAGGACCAC CTCCGTTCAG GCCACAATGG AGGCTGTGGG GGTGATAGTG 1861 ACCCATCAGG TCAGCCACCC AACCCACCAG GTCCCCTCAT AACTGGGCTT GAAACTTCTG 1921 GCCTGGGTGT CAACACTGAA GGTCTAGAGA CCAACCAGTG GTATGGGGAA GGGAGTGGAG 1981 GGGGAGTTTT GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 2041 caatttgttg caacgaac