Transcript: Human XM_011516439.2

PREDICTED: Homo sapiens zinc finger protein 398 (ZNF398), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF398 (57541)
Length:
5306
CDS:
142..2085

Additional Resources:

NCBI RefSeq record:
XM_011516439.2
NBCI Gene record:
ZNF398 (57541)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011516439.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000020338 CCTACCATCTTCGGGTCCATA pLKO.1 1397 CDS 100% 4.950 6.930 N ZNF398 n/a
2 TRCN0000233291 TACCATCTTCGGGTCCATAAC pLKO_005 1399 CDS 100% 0.000 0.000 N ZNF398 n/a
3 TRCN0000233293 GCCTAGGTTTCTTAGATTAAT pLKO_005 2671 3UTR 100% 15.000 10.500 N ZNF398 n/a
4 TRCN0000233289 TCCATGGATTATGCTATAAAT pLKO_005 697 CDS 100% 15.000 10.500 N ZNF398 n/a
5 TRCN0000233290 CAGTGAAGAGCCTGGTATTTC pLKO_005 810 CDS 100% 13.200 9.240 N ZNF398 n/a
6 TRCN0000020336 CCAGTGAAGAGCCTGGTATTT pLKO.1 809 CDS 100% 13.200 9.240 N ZNF398 n/a
7 TRCN0000233292 ATCCGCAAGCACCACCTAATG pLKO_005 1801 CDS 100% 10.800 7.560 N ZNF398 n/a
8 TRCN0000020334 CCCTCATAACTGGGCTTGAAA pLKO.1 1985 CDS 100% 5.625 3.938 N ZNF398 n/a
9 TRCN0000020335 CCTGATGTCTTATCTCAGATT pLKO.1 721 CDS 100% 4.950 3.465 N ZNF398 n/a
10 TRCN0000020337 CCTAATGAAACACCAGCGCAT pLKO.1 1815 CDS 100% 2.160 1.512 N ZNF398 n/a
11 TRCN0000179737 CAACAGGAACTTCTGGATCTT pLKO.1 519 CDS 100% 4.950 2.475 Y LOC155060 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011516439.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08742 pDONR223 100% 97.7% 97.6% None (many diffs) n/a
2 ccsbBroad304_08742 pLX_304 0% 97.7% 97.6% V5 (many diffs) n/a
3 TRCN0000479082 TCACTATTTTTATCCGAGATCAGT pLX_317 18.5% 97.7% 97.6% V5 (many diffs) n/a
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