Transcript: Mouse NM_173034.3

Mus musculus zinc finger protein 398 (Zfp398), transcript variant 2, mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Zfp398 (272347)
Length:
3082
CDS:
237..1772

Additional Resources:

NCBI RefSeq record:
NM_173034.3
NBCI Gene record:
Zfp398 (272347)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_173034.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000084926 TGGCCTTTCAACCTCAGATAT pLKO.1 506 CDS 100% 13.200 9.240 N Zfp398 n/a
2 TRCN0000084923 GCAGAGTTACAAAGCAAGATA pLKO.1 1999 3UTR 100% 5.625 3.938 N Zfp398 n/a
3 TRCN0000084925 CACTCTTAACTGCCCTGGAAA pLKO.1 1672 CDS 100% 4.950 3.465 N Zfp398 n/a
4 TRCN0000084927 CTGGCCTTTCAACCTCAGATA pLKO.1 505 CDS 100% 4.950 3.465 N Zfp398 n/a
5 TRCN0000084924 GCCATGAATCAACCTGATGTT pLKO.1 393 CDS 100% 4.950 3.465 N Zfp398 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_173034.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08742 pDONR223 100% 68.4% 70.2% None (many diffs) n/a
2 ccsbBroad304_08742 pLX_304 0% 68.4% 70.2% V5 (many diffs) n/a
3 TRCN0000479082 TCACTATTTTTATCCGAGATCAGT pLX_317 18.5% 68.4% 70.2% V5 (many diffs) n/a
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