Construct: ORF ccsbBroadEn_08752
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006846.1_s300c1, BRDN0000396849
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRN1 (57633)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57633 | LRRN1 | leucine rich repeat neuronal 1 | NM_001324188.2 | 99.8% | 99.8% | 255A>G;791A>G;1551T>C |
| 2 | human | 57633 | LRRN1 | leucine rich repeat neuronal 1 | NM_001324189.2 | 99.8% | 99.8% | 255A>G;791A>G;1551T>C |
| 3 | human | 57633 | LRRN1 | leucine rich repeat neuronal 1 | NM_020873.7 | 99.8% | 99.8% | 255A>G;791A>G;1551T>C |
| 4 | mouse | 16979 | Lrrn1 | leucine rich repeat protein... | NM_008516.4 | 87.4% | 95.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2214
- ORF length:
- 2148
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TAGGATGAGC TTTGTTATAG CAGCTTGCCA ATTGGTGCTG GGCCTACTAA 121 TGACTTCATT AACCGAGTCT TCCATACAGA ATAGTGAGTG TCCACAACTT TGCGTATGTG 181 AAATTCGTCC CTGGTTTACC CCACAGTCAA CTTACAGAGA AGCCACCACT GTTGATTGCA 241 ATGACCTCCG CTTAACAAGG ATTCCCAGTA ACCTCTCTAG TGACACACAA GTGCTTCTCT 301 TACAGAGCAA TAACATCGCG AAGACTGTGG ATGAGCTGCA GCAGCTTTTC AACTTGACTG 361 AACTAGATTT CTCCCAAAAC AACTTTACTA ACATTAAGGA GGTCGGGCTG GCAAACCTAA 421 CCCAGCTCAC AACGCTGCAT TTGGAGGAAA ATCAGATTAC CGAGATGACT GATTACTGTC 481 TACAAGACCT CAGCAACCTT CAAGAACTCT ACATCAACCA CAACCAAATT AGCACTATTT 541 CTGCTCATGC TTTTGCAGGC TTAAAAAATC TATTAAGGCT CCACCTGAAC TCCAACAAAT 601 TGAAAGTTAT TGATAGTCGC TGGTTTGATT CTACACCCAA CCTGGAAATT CTCATGATCG 661 GAGAAAACCC TGTGATTGGA ATTCTGGATA TGAACTTCAA ACCCCTCGCA AATTTGAGAA 721 GCTTAGTTTT GGCAGGAATG TATCTCACTG ATATTCCTGG AAATGCTTTG GTGGGTCTGG 781 ATAGCCTTGA GAGCCTGTCT TTTTATGATA ACAAACTGGT TAAAGTCCCT CAACTTGCCC 841 TGCAAAAAGT TCCAAGTTTG AAATTCTTAG ACCTCAACAA AAACCCCATT CACAAAATCC 901 AAGAAGGGGA CTTCAAAAAT ATGCTTCGGT TAAAAGAACT GGGAATCAAC AATATGGGCG 961 AGCTCGTTTC TGTCGACCGC TATGCCCTGG ATAACTTGCC TGAACTCACA AAGCTGGAAG 1021 CCACCAATAA CCCTAAACTC TCTTACATCC ACCGCTTGGC TTTCCGAAGT GTCCCTGCTC 1081 TGGAAAGCTT GATGCTGAAC AACAATGCCT TGAATGCCAT TTACCAAAAG ACAGTCGAAT 1141 CCCTCCCCAA TCTGCGTGAG ATCAGTATCC ATAGCAATCC CCTCAGGTGT GACTGTGTGA 1201 TCCACTGGAT TAACTCCAAC AAAACCAACA TCCGCTTCAT GGAGCCCCTG TCCATGTTCT 1261 GTGCCATGCC GCCCGAATAT AAAGGGCACC AGGTGAAGGA AGTTTTAATC CAGGATTCGA 1321 GTGAACAGTG CCTCCCAATG ATATCTCACG ACAGCTTCCC AAATCGTTTA AACGTGGATA 1381 TCGGCACGAC GGTTTTCCTA GACTGTCGAG CCATGGCTGA GCCAGAACCT GAAATTTACT 1441 GGGTCACTCC CATTGGAAAT AAGATAACTG TGGAAACCCT TTCAGATAAA TACAAGCTAA 1501 GTAGCGAAGG TACCTTGGAA ATATCTAACA TACAAATTGA AGACTCAGGA AGATACACAT 1561 GTGTTGCCCA GAATGTCCAA GGGGCAGACA CTCGGGTGGC AACAATTAAG GTTAACGGGA 1621 CCCTTCTGGA TGGTACCCAG GTGCTAAAAA TATACGTCAA GCAGACAGAA TCCCATTCCA 1681 TCTTAGTGTC CTGGAAAGTT AATTCCAATG TCATGACGTC AAACTTAAAA TGGTCGTCTG 1741 CCACCATGAA GATTGATAAC CCTCACATAA CATATACTGC CAGGGTCCCA GTCGATGTCC 1801 ATGAATACAA CCTAACGCAT CTGCAGCCTT CCACAGATTA TGAAGTGTGT CTCACAGTGT 1861 CCAATATTCA TCAGCAGACT CAAAAGTCAT GCGTAAATGT CACAACCAAA AATGCCGCCT 1921 TCGCAGTGGA CATCTCTGAT CAAGAAACCA GTACAGCCCT TGCTGCAGTA ATGGGGTCTA 1981 TGTTTGCCGT CATTAGCCTT GCGTCCATTG CTGTGTACTT TGCCAAAAGA TTTAAGAGAA 2041 AAAACTACCA CCACTCATTA AAAAAGTATA TGCAAAAAAC CTCTTCAATC CCACTAAATG 2101 AGCTGTACCC ACCACTCATT AACCTCTGGG AAGGTGACAG CGAGAAAGAC AAAGATGGTT 2161 CTGCAGACAC CAAGCCAACC CAGGTCGACA CATCCAGAAG CTATTACATG TGGTACCCAA 2221 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac