Construct: ORF ccsbBroadEn_08758

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009088.1_s300c1, BRDN0000396875
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GPAM (57678)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57678 GPAM glycerol-3-phosphate acyltr... NM_001244949.2 99.9% 99.7% 11C>A;241C>A
2 human 57678 GPAM glycerol-3-phosphate acyltr... NM_020918.6 99.9% 99.7% 11C>A;241C>A
3 human 57678 GPAM glycerol-3-phosphate acyltr... XM_005269998.1 99.9% 99.7% 11C>A;241C>A
4 human 57678 GPAM glycerol-3-phosphate acyltr... XM_024448089.1 99.9% 99.7% 11C>A;241C>A
5 mouse 14732 Gpam glycerol-3-phosphate acyltr... NM_008149.3 84.5% 92.5% (many diffs)
6 mouse 14732 Gpam glycerol-3-phosphate acyltr... XM_006526692.3 84.5% 92.5% (many diffs)
7 mouse 14732 Gpam glycerol-3-phosphate acyltr... XM_006526693.3 84.5% 92.5% (many diffs)
8 mouse 14732 Gpam glycerol-3-phosphate acyltr... XM_006526694.1 84.5% 92.5% (many diffs)
9 mouse 14732 Gpam glycerol-3-phosphate acyltr... XM_011247147.1 84.5% 92.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2550
ORF length:
2484
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TGAATATGCA CTGACCCTTG GTACAATAGA TGTTTCTTAT CTGCCACATT
121CATCAGAATA CAGTGTTGGT CGATGTAAGC ACACAAGTGA GGAATGGGGT GAGTGTGGCT
181TTAGACCCAC CATCTTCAGA TCTGCAACTT TAAAATGGAA AGAAAGCCTA ATGAGTCGGA
241AAAGGCCATT TGTTGGAAGA TGTTGTTACT CCTGCACTCC CCAGAGCTGG GACAAATTTT
301TCAACACCAG TATCCCGTCT TTGGGTTTGC GGAATGTTAT TTATATCAAT GAAACTCACA
361CAAGACACCG CGGATGGCTT GCAAGACGCC TTTCTTACGT TCTTTTTATT CAAGAGCGAG
421ATGTGCATAA GGGCATGTTT GCCACCAATG TGACTGAAAA TGTGCTGAAC AGCAGTAGAG
481TACAAGAGGC AATTGCAGAA GTGGCTGCTG AATTAAACCC TGATGGTTCT GCCCAGCAGC
541AATCAAAAGC CGTTAACAAA GTGAAAAAGA AAGCTAAAAG GATTCTTCAA GAAATGGTTG
601CCACTGTCTC ACCGGCAATG ATCAGACTGA CTGGGTGGGT GCTGCTAAAA CTGTTCAACA
661GCTTCTTTTG GAACATTCAA ATTCACAAAG GTCAACTTGA GATGGTTAAA GCTGCAACTG
721AGACGAATTT GCCGCTTCTG TTTCTACCAG TTCATAGATC CCATATTGAC TATCTGCTGC
781TCACTTTCAT TCTCTTCTGC CATAACATCA AAGCACCATA CATTGCTTCA GGCAATAATC
841TCAACATCCC AATCTTCAGT ACCTTGATCC ATAAGCTTGG GGGCTTCTTC ATACGACGAA
901GGCTCGATGA AACACCAGAT GGACGGAAAG ATGTTCTCTA TAGAGCTTTG CTCCATGGGC
961ATATAGTTGA ATTACTTCGA CAGCAGCAAT TCTTGGAGAT CTTCCTGGAA GGCACACGTT
1021CTAGGAGTGG AAAAACCTCT TGTGCTCGGG CAGGACTTTT GTCAGTTGTG GTAGATACTC
1081TGTCTACCAA TGTCATCCCA GACATCTTGA TAATACCTGT TGGAATCTCC TATGATCGCA
1141TTATCGAAGG TCACTACAAT GGTGAACAAC TGGGCAAACC TAAGAAGAAT GAGAGCCTGT
1201GGAGTGTAGC AAGAGGTGTT ATTAGAATGT TACGAAAAAA CTATGGTTGT GTCCGAGTGG
1261ATTTTGCACA GCCATTTTCC TTAAAGGAAT ATTTAGAAAG CCAAAGTCAG AAACCGGTGT
1321CTGCTCTACT TTCCCTGGAG CAAGCGTTGT TACCAGCTAT ACTTCCTTCA AGACCCAGTG
1381ATGCTGCTGA TGAAGGTAGA GACACGTCCA TTAATGAGTC CAGAAATGCA ACAGATGAAT
1441CCCTACGAAG GAGGTTGATT GCAAATCTGG CTGAGCATAT TCTATTCACT GCTAGCAAGT
1501CCTGTGCCAT TATGTCCACA CACATTGTGG CTTGCCTGCT CCTCTACAGA CACAGGCAGG
1561GAATTGATCT CTCCACATTG GTCGAAGACT TCTTTGTGAT GAAAGAGGAA GTCCTGGCTC
1621GTGATTTTGA CCTGGGGTTC TCAGGAAATT CAGAAGATGT AGTAATGCAT GCCATACAGC
1681TGCTGGGAAA TTGTGTCACA ATCACCCACA CTAGCAGGAA CGATGAGTTT TTTATCACCC
1741CCAGCACAAC TGTCCCATCA GTCTTCGAAC TCAACTTCTA CAGCAATGGG GTACTTCATG
1801TCTTTATCAT GGAGGCCATC ATAGCTTGCA GCCTTTATGC AGTTCTGAAC AAGAGGGGAC
1861TGGGGGGTCC CACTAGCACC CCACCTAACC TGATCAGCCA GGAGCAGCTG GTGCGGAAGG
1921CGGCCAGCCT GTGCTACCTT CTCTCCAATG AAGGCACCAT CTCACTGCCT TGCCAGACAT
1981TTTACCAAGT CTGCCATGAA ACAGTAGGAA AGTTTATCCA GTATGGCATT CTTACAGTGG
2041CAGAGCACGA TGACCAGGAA GATATCAGTC CTAGTCTTGC TGAGCAGCAG TGGGACAAGA
2101AGCTTCCAGA ACCTTTGTCT TGGAGAAGTG ATGAAGAAGA TGAAGACAGT GACTTTGGGG
2161AGGAACAGCG AGATTGCTAC CTGAAGGTGA GCCAATCCAA GGAGCACCAG CAGTTTATCA
2221CCTTCTTACA GAGACTCCTT GGGCCTTTGC TGGAGGCCTA CAGCTCTGCT GCCATCTTTG
2281TTCACAACTT CAGTGGTCCT GTTCCAGAAC CTGAGTATCT GCAAAAGTTG CACAAATACC
2341TAATAACCAG AACAGAAAGA AATGTTGCAG TATATGCTGA GAGTGCCACA TATTGTCTTG
2401TGAAGAATGC TGTGAAAATG TTTAAGGATA TTGGGGTTTT CAAGGAGACC AAACAAAAGA
2461GAGTGTCTGT TTTAGAACTG AGCAGCACTT TTCTACCTCA ATGCAACCGA CAAAAACTTC
2521TAGAATATAT TCTGAGTTTT GTGGTGCTGT ACCCAACTTT CTTGTACAAA GTtggcatta
2581taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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