Construct: ORF ccsbBroadEn_08761

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009822.1_s300c1, BRDN0000386582
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM160B1 (57700)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57700 FAM160B1 family with sequence simila... NM_001135051.2 99.9% 99.8% 1222C>A
2 human 57700 FAM160B1 family with sequence simila... NM_020940.4 95.9% 94.4% (many diffs)
3 mouse 226252 Fam160b1 family with sequence simila... NM_145505.4 80.5% 88.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2280
ORF length:
2214
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT CTCCAAGTTC ACCTCCATCC TGCAGCACGC CGTGGAGGCG CTTGCACCTT
121CTCTTCCTTT ACAAGAAGAT TTTGTTTATC ACTGGAAGGC AATTACCCAT TACTACATAG
181AGACTTCAGA TGATAAAGCC CCAGTGACCG ATACAAATAT TCCATCGCAT CTGGAACAGA
241TGTTAGATAT ACTGGTTCAA GAAGAAAATG AACGGGAATC TGGAGAGACA GGGCCATGTA
301TGGAATATTT GCTTCATCAC AAGATCTTGG AAACATTATA TACCTTGGGG AAAGCTGATT
361GTCCTCCGGG AATGAAACAG CAGGTTTTGG TTTTCTATAC GAAACTTCTG GGAAGAATCC
421GGCAGCCACT ACTTCCACAC ATTAACGTGC ACAGGCCAGT GCAGAAATTA ATTAGACTCT
481GTGGTGAAGT CCTAGCAACA CCAACAGAAA ATGAAGAGAT TCAGTTTCTT TGCATTGTGT
541GTGCGAAGCT GAAACAGGAC CCCTACCTGG TTAACTTTTT CCTAGAGAAT AAGATGAAAT
601CATTGGCTTC CAAAGGAGTA CCAAATGTAA TTTCAGAAGA TACATTAAAA GGTCAGGATT
661CCTTGTCAAC AGATACAGGA CAGTCCCGTC AACCAGAGGA ACTATCTGGT GCTACTGGAA
721TGGAGCAAAC AGAATTGGAA GATGAGCCTC CTCATCAGAT GGATCACCTG TCCACAAGCT
781TGGATAACCT CAGTGTCACC TCACTGCCAG AGGCCTCGGT TGTTTGTCCA AATCAGGATT
841ACAATTTAGT GAATTCTTTG TTAAATCTTA CTAGAAGTCC TGATGGCAGA ATAGCTGTGA
901AGGCATGTGA AGGCTTGATG CTGTTAGTAA GTTTGCCAGA GCCTGCGGCT GCAAAGTGCC
961TTACACAGAG CACTTGCTTG TGTGAACTAC TGACAGACAG ACTTGCCTCC CTGTACAAGG
1021CCCTACCTCA GTCAGTGGAT CCGTTAGATA TTGAAACCGT GGAAGCAATT AACTGGGGCT
1081TGGACTCATA TAGTCATAAA GAAGATGCTT CAGCATTTCC AGGAAAACGA GCCTTAATTT
1141CATTTCTTTC CTGGTTTGAT TATTGTGATC AGCTCATTAA GGAAGCCCAA AAGACTGCTG
1201CTGTTGCTCT TGCCAAAGCT GTTCATGAAA GATTTTTCAT TGGTGTTATG GAACCTCAAT
1261TAATGCAAAC TTCTGAGATG GGTATTATCA CATCCACTGC TCTGCTTCAT CGCATCGTTC
1321GGCAAGTGAC CTCTGATGTT TTGCTTCAAG AAATGGTGTT TTTTATCCTT GGAGAACAGA
1381GGGAACCAGA AACTCTGGCA GAAATCAGCA GACATCCTTT AAGGCATAGG TTAATTGAAC
1441ATTGTGATCA CATATCTGAT GAGATAAGCA TAATGACATT ACGAATGTTT GAACATCTTT
1501TACAAAAACC CAATGAGCAC ATTCTTTACA ACTTGGTCTT GAGAAATCTT GAAGAAAGAA
1561ATTATACAGA ATATAAACCT TTGTGCCCAG AAGATAAAGA TGTGGTAGAA AATGGATTGA
1621TAGCAGGAGC AGTAGATCTG GAAGAAGATC CATTATTTAC TGACATTTCA CCAGAAAACA
1681CTTTGCCAAA CCAAGAGTGG CTTAGTTCTT CACCTCCTGC TACTCCAGAC CACCCCAAAA
1741ATGATGGAAA AACTGAAGTT CATAAAATTG TAAATAGTTT TCTCTGTCTG GTACCGGATG
1801ACGCAAAATC CTCCTACCAT GTTGAGGGCA CAGGATATGA CACTTACCTC CGAGACGCTC
1861ATAGGCAGTT CCGAGACTAC TGTGCTATCT GCTTAAGATG GGAGTGGCCT GGGTCTCCAA
1921AAGCATTGGA AAAGTGCAAT TTAGAAGCTG CTTTCTTTGA AGGTCATTTT TTGAAAGTGC
1981TGTTCGACAG AATGGGAAGA ATTCTTGATC AGCCATATGA TGTAAACTTA CAAGTAACCT
2041CAGTGTTATC TAGACTTTCT CTCTTCCCTC ATCCACACAT CCACGAGTAC CTTTTGGATC
2101CTTACGTGAA CCTCGCTCCT GGCTGTAGAT CTCTCTTCTC TGTAATTGTC AGGGTTGTTG
2161GAGACCTTAT GCTTCGAATC CAGCGTATTC AAGACTTTAC TCCCAAGCTT CTGTTAGTCA
2221GAAAGCGGTT ACTTGGTTTG GAACCTGAAG GCCCTATGCA GACGTTGCCT TCATGGTGGT
2281ATCCAACTTT CTTGTACANA AGTtggcatt ataagaaagc attgcttatc aatttgttgc
2341aacgaac

Download FASTA (ORF) (Full)