Construct: ORF ccsbBroadEn_08786
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005657.1_s300c1, BRDN0000395964
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF350 (59348)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 59348 | ZNF350 | zinc finger protein 350 | NM_021632.4 | 99.9% | 100% | 105T>C |
| 2 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_017027098.1 | 99.9% | 100% | 105T>C |
| 3 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_017027099.1 | 99.9% | 100% | 105T>C |
| 4 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_017027100.1 | 99.9% | 100% | 105T>C |
| 5 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_011527196.1 | 93.2% | 93.2% | 0_1ins108 |
| 6 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_017027094.1 | 92.6% | 92.6% | 105T>C;238_363del |
| 7 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_017027095.1 | 92.6% | 92.6% | 105T>C;238_363del |
| 8 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_017027096.1 | 92.6% | 92.6% | 105T>C;238_363del |
| 9 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_024451632.1 | 86.4% | 86.4% | 0_1ins108;130_255del |
| 10 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_017027101.1 | 57.5% | 57.5% | 0_1ins678 |
| 11 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_017027102.2 | 57.5% | 57.5% | 0_1ins678 |
| 12 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_017027103.2 | 57.5% | 57.5% | 0_1ins678 |
| 13 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_024451633.1 | 57.5% | 57.5% | 0_1ins678 |
| 14 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_024451634.1 | 57.5% | 57.5% | 0_1ins678 |
| 15 | human | 59348 | ZNF350 | zinc finger protein 350 | XM_024451635.1 | 57.5% | 57.5% | 0_1ins678 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1662
- ORF length:
- 1596
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT CCAGGCCCAG GAATCCATAA CACTGGAGGA TGTGGCTGTG GACTTCACTT 121 GGGAGGAGTG GCAACTCCTG GGCGCTGCTC AGAAGGACCT GTACCGGGAC GTGATGTTGG 181 AGAACTACAG CAACCTGGTG GCAGTGGGGT ATCAAGCCAG CAAACCGGAT GCACTCTTCA 241 AGTTGGAACA AGGAGAACAA CTGTGGACAA TTGAAGATGG AATCCACAGT GGAGCCTGTT 301 CAGACATATG GAAAGTTGAT CATGTGCTGG AGCGCTTGCA GAGTGAAAGC CTGGTGAACA 361 GAAGGAAACC ATGTCATGAA CATGATGCAT TTGAAAATAT TGTTCATTGC AGCAAAAGTC 421 AGTTTCTGTT AGGGCAAAAT CATGATATAT TTGACTTACG TGGAAAAAGT TTGAAATCCA 481 ATTTAACTTT AGTTAACCAG AGCAAAGGCT ATGAAATAAA GAACTCTGTT GAGTTTACTG 541 GAAATGGGGA CTCCTTTCTT CATGCTAACC ATGAACGACT TCATACTGCA ATTAAATTCC 601 CTGCAAGTCA AAAACTCATC AGCACTAAGT CCCAATTCAT CAGTCCCAAG CATCAGAAAA 661 CACGAAAATT AGAGAAGCAT CATGTGTGCA GTGAATGTGG GAAAGCCTTC ATCAAGAAGT 721 CTTGGCTAAC TGATCACCAG GTAATGCATA CAGGAGAGAA ACCCCACAGA TGTAGTCTAT 781 GTGAGAAAGC CTTCTCCAGA AAGTTCATGC TTACTGAACA TCAGCGAACT CATACAGGAG 841 AAAAACCTTA TGAATGCCCT GAATGTGGCA AAGCCTTTCT CAAGAAATCA CGGCTCAACA 901 TACATCAGAA AACACATACC GGAGAGAAAC CCTATATATG CAGTGAATGT GGAAAAGGCT 961 TCATCCAGAA AGGAAATCTC ATTGTACACC AGCGAATTCA TACAGGTGAG AAACCTTATA 1021 TATGCAATGA ATGTGGAAAA GGCTTCATTC AGAAGACGTG TCTCATAGCA CATCAGAGAT 1081 TTCACACAGG AAAGACGCCC TTTGTGTGCA GTGAATGTGG AAAATCCTGT TCTCAGAAAT 1141 CAGGTCTCAT TAAACATCAA AGAATTCACA CAGGAGAGAA ACCCTTTGAA TGTAGTGAAT 1201 GTGGGAAAGC CTTTAGCACA AAGCAAAAGC TCATTGTCCA TCAAAGGACT CATACAGGAG 1261 AGAGACCCTA TGGCTGTAAC GAGTGTGGGA AAGCGTTTGC GTATATGTCG TGTCTGGTTA 1321 AGCATAAGAG AATACACACA AGGGAGAAAC AAGAGGCAGC CAAGGTGGAA AATCCTCCTG 1381 CAGAGAGGCA CAGCTCATTA CACACCAGTG ATGTCATGCA GGAGAAAAAC TCTGCTAACG 1441 GGGCGACTAC ACAAGTGCCT TCTGTGGCCC CTCAGACATC ATTAAACATC AGCGGCCTCC 1501 TCGCAAACAG GAACGTAGTC CTTGTGGGAC AGCCAGTGGT CAGATGTGCA GCCTCAGGAG 1561 ATAACAGAGG ATTTGCACAG GACAGAAACC TTGTGAATGC AGTGAATGTG GTTGTGCCTT 1621 CCGTGATCAA TTATGTCTTA TTTTATGTTA CAGAAAACCC ATACCCAACT TTCTTGTACA 1681 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac