Construct: ORF ccsbBroadEn_08804

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006937.1_s300c1, BRDN0000396546
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CELF5 (60680)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 60680 CELF5 CUGBP Elav-like family memb... NM_021938.4 99.9% 100% 159G>C
2 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722832.1 99.9% 100% 159G>C
3 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722833.1 99.7% 99.7% 159G>C;391_392insGTA
4 human 60680 CELF5 CUGBP Elav-like family memb... NM_001172673.2 84.2% 75.1% (many diffs)
5 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722836.2 77.7% 76.5% (many diffs)
6 human 60680 CELF5 CUGBP Elav-like family memb... XR_001753733.1 76.7% (many diffs)
7 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722837.4 76.4% 76.4% 0_1ins342
8 human 60680 CELF5 CUGBP Elav-like family memb... XM_006722838.4 76.4% 76.4% 0_1ins342
9 human 60680 CELF5 CUGBP Elav-like family memb... XM_011528173.1 76.4% 76.4% 0_1ins342
10 human 60680 CELF5 CUGBP Elav-like family memb... XM_011528174.3 76.2% 76.2% 0_1ins342;49_50insGTA
11 human 60680 CELF5 CUGBP Elav-like family memb... XM_017027111.1 71.3% 71.3% 0_1ins417
12 human 60680 CELF5 CUGBP Elav-like family memb... NR_033342.2 64.5% (many diffs)
13 human 60680 CELF5 CUGBP Elav-like family memb... XR_430147.1 39.3% (many diffs)
14 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_011243472.2 82.3% 88.8% (many diffs)
15 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513743.3 82.1% 88.6% (many diffs)
16 mouse 319586 Celf5 CUGBP, Elav-like family mem... NM_176954.3 72.9% 69.9% (many diffs)
17 mouse 319586 Celf5 CUGBP, Elav-like family mem... NM_001311124.1 72.7% 69.7% (many diffs)
18 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513744.3 72.6% 74.7% (many diffs)
19 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513749.3 68.3% 74% (many diffs)
20 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513747.1 68.2% 74.2% (many diffs)
21 mouse 319586 Celf5 CUGBP, Elav-like family mem... XM_006513748.3 68% 74% (many diffs)
22 mouse 319586 Celf5 CUGBP, Elav-like family mem... NM_001311127.1 58.9% 55.6% (many diffs)
23 mouse 319586 Celf5 CUGBP, Elav-like family mem... NM_001311126.1 58.7% 55.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1521
ORF length:
1455
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCGCCTGACG GAGAGCGAGG CGCGCCGGCA GCAGCAGCAG CTCCTGCAGC
121CGCGGCCCTC GCCCGTGGGC AGCAGCGGGC CCGAGCCCCC CGGGGGGCAG CCCGACGGCA
181TGAAGGACCT GGACGCCATC AAACTCTTCG TGGGCCAGAT CCCCCGGCAC CTGGACGAGA
241AGGACCTCAA GCCGCTCTTC GAGCAGTTCG GCCGCATCTA CGAGCTCACG GTGCTCAAAG
301ACCCCTACAC GGGGATGCAC AAAGGCTGTG CCTTCCTCAC CTACTGTGCC AGGGATTCCG
361CCATCAAAGC TCAGACTGCC CTGCACGAGC AGAAGACCTT GCCCGGAATG GCGCGGCCAA
421TCCAGGTGAA GCCTGCGGAC AGTGAAAGCC GCGGAGGTAG GGACCGGAAG CTGTTCGTGG
481GGATGCTGAA CAAGCAGCAG TCGGAGGAGG ACGTGCTGCG GCTGTTCCAG CCCTTCGGGG
541TCATTGACGA GTGCACCGTG CTCCGGGGGC CTGACGGCAG CAGCAAAGGC TGTGCTTTCG
601TGAAGTTCTC CTCCCACACG GAGGCGCAGG CGGCCATCCA CGCCTTGCAT GGGAGCCAGA
661CCATGCCGGG AGCCTCCTCC AGCCTGGTGG TCAAGTTCGC CGACACGGAC AAGGAGCGGA
721CGCTCCGGCG CATGCAGCAG ATGGTGGGCC AGCTGGGCAT CCTGACGCCG TCCCTCACAT
781TGCCCTTCAG CCCCTACAGT GCCTACGCCC AGGCTCTCAT GCAACAGCAG ACAACAGTCC
841TGTCCACCTC GGGCAGCTAC CTGAGTCCCG GCGTGGCCTT CTCACCCTGT CACATCCAGC
901AGATAGGCGC CGTCAGCCTC AACGGGCTGC CTGCCACACC CATCGCTCCT GCCTCTGGGC
961TGCACTCACC CCCGCTGCTG GGCACCACCG CTGTGCCTGG CCTCGTGGCT CCCATCACCA
1021ATGGCTTTGC AGGTGTCGTG CCCTTTCCAG GTGGGCACCC TGCCCTGGAA ACCGTCTATG
1081CCAATGGCCT TGTGCCCTAC CCAGCTCAGA GCCCGACTGT GGCCGAGACA CTGCATCCTG
1141CCTTCTCCGG AGTCCAGCAG TACACAGCCA TGTACCCCAC CGCGGCCATC ACGCCCATCG
1201CGCACAGCGT CCCCCAGCCG CCGCCCCTCC TGCAGCAGCA GCAGCGAGAA GGTCCCGAGG
1261GCTGTAACCT GTTTATCTAC CACCTCCCCC AGGAGTTTGG AGACACGGAG CTGACGCAGA
1321TGTTCCTACC CTTCGGCAAT ATCATTTCCT CCAAGGTGTT TATGGATCGA GCTACCAACC
1381AGAGCAAGTG TTTCGGCTTC GTGAGCTTTG ATAACCCGGC CAGCGCCCAG GCAGCCATCC
1441AGGCCATGAA CGGCTTCCAG ATCGGCATGA AGAGGCTCAA AGTCCAGCTG AAGCGGCCCA
1501AAGACCCGGG ACACCCCTAC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1561attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)