Construct: ORF ccsbBroadEn_08825
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016503.1_s300c1, BRDN0000393107
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LHPP (64077)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64077 | LHPP | phospholysine phosphohistid... | NM_001167880.2 | 99.8% | 99.5% | 281A>G |
| 2 | human | 64077 | LHPP | phospholysine phosphohistid... | NM_001318332.2 | 98.4% | 97.6% | 281A>G;625_631delTTACTTTinsGCC;635_636delTA |
| 3 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_011540058.3 | 95.4% | 94.5% | (many diffs) |
| 4 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_017016511.1 | 84.7% | 84.2% | 281A>G;628_629delGT;632_741delinsG |
| 5 | human | 64077 | LHPP | phospholysine phosphohistid... | NM_001318331.2 | 84.2% | 75.1% | (many diffs) |
| 6 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_024448122.1 | 78.1% | 77.6% | 281A>G;628_629delGT;632_804delinsG |
| 7 | human | 64077 | LHPP | phospholysine phosphohistid... | NM_022126.4 | 77.5% | 77% | 281A>G;628_629delGT;632_810delinsG |
| 8 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_005270026.4 | 75% | 74.5% | 281A>G;628_629delGT;632_837delinsG |
| 9 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_017016510.1 | 70.7% | 70.2% | 281A>G;628_629delGT;632_888delinsG |
| 10 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_017016509.1 | 54.9% | 54.5% | 281A>G;628_629delGT;632_1143delinsG |
| 11 | human | 64077 | LHPP | phospholysine phosphohistid... | XR_001747177.2 | 15.7% | (many diffs) | |
| 12 | mouse | 76429 | Lhpp | phospholysine phosphohistid... | NM_029609.1 | 65.3% | 68.5% | (many diffs) |
| 13 | mouse | 76429 | Lhpp | phospholysine phosphohistid... | XM_006508297.1 | 30.6% | 33.3% | (many diffs) |
| 14 | mouse | 76429 | Lhpp | phospholysine phosphohistid... | XM_006508298.3 | 29.6% | 31.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 696
- ORF length:
- 630
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC ACCGTGGGGC AAGCGGCTGG CTGGCGTGCG CGGGGTGCTG CTTGACATCT 121 CGGGCGTGCT GTACGACAGC GGCGCGGGCG GCGGCACGGC CATCGCCGGC TCGGTGGAGG 181 CGGTGGCCAG ACTGAAGCGT TCCCGGCTGA AGGTGAGGTT CTGCACCAAC GAGTCGCAGA 241 AGTCCCGGGC AGAGCTGGTG GGGCAGCTTC AGAGGCTGGG ATTTGACATC TCTGAGCAGG 301 AGGTGACCGC CCCGGCACCA GCTGCCTGCC AGATCCTGAA GGAGCGAGGC CTGCGACCAT 361 ACCTGCTCAT CCATGACGGA GTCCGCTCAG AATTTGATCA GATCGACACA TCCAACCCAA 421 ACTGTGTGGT AATTGCAGAC GCAGGAGAAA GCTTTTCTTA TCAAAACATG AATAACGCCT 481 TCCAGGTGCT CATGGAGCTG GAAAAACCTG TGCTCATATC ACTGGGAAAA GGGCGTTACT 541 ACAAGGAGAC CTCTGGCCTG ATGCTGGACG TTGGTCCCTA CATGAAGGCG CTTGAGTATG 601 CCTGTGGCAT CAAAGCCGAG GTGGTGGGGA AGCCTTCTCC TGAGTTTTTC AAGTCTGCCC 661 TGCAAGCGAT AGGAGTGGAA GCCCACCAGG CCCAGTGCCC AACTTTCTTG TACAAAGTtg 721 gcattataag aaagcattgc ttatcaattt gttgcaacga ac