Construct: ORF ccsbBroadEn_08826
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010198.1_s300c1, BRDN0000387709
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LHPP (64077)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64077 | LHPP | phospholysine phosphohistid... | NM_022126.4 | 99.8% | 99.6% | 281A>G |
| 2 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_024448122.1 | 91.5% | 90.7% | (many diffs) |
| 3 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_017016511.1 | 89.5% | 88.5% | (many diffs) |
| 4 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_005270026.4 | 86.9% | 84.3% | (many diffs) |
| 5 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_017016510.1 | 82.1% | 81.3% | (many diffs) |
| 6 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_011540058.3 | 79% | 76.8% | (many diffs) |
| 7 | human | 64077 | LHPP | phospholysine phosphohistid... | NM_001167880.2 | 77.5% | 77% | 281A>G;627_628insGT;630_630delGins179 |
| 8 | human | 64077 | LHPP | phospholysine phosphohistid... | NM_001318332.2 | 77.3% | 76.6% | (many diffs) |
| 9 | human | 64077 | LHPP | phospholysine phosphohistid... | NM_001318331.2 | 69.1% | 68.8% | 281A>G;466_467ins249 |
| 10 | human | 64077 | LHPP | phospholysine phosphohistid... | XM_017016509.1 | 64.4% | 59.2% | (many diffs) |
| 11 | human | 64077 | LHPP | phospholysine phosphohistid... | XR_001747177.2 | 19.1% | (many diffs) | |
| 12 | mouse | 76429 | Lhpp | phospholysine phosphohistid... | NM_029609.1 | 84.5% | 88.5% | (many diffs) |
| 13 | mouse | 76429 | Lhpp | phospholysine phosphohistid... | XM_006508297.1 | 49.8% | 53.3% | (many diffs) |
| 14 | mouse | 76429 | Lhpp | phospholysine phosphohistid... | XM_006508298.3 | 48.8% | 51.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 879
- ORF length:
- 810
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCACCGTGG GGCAAGCGGC TGGCTGGCGT GCGCGGGGTG CTGCTTGACA 121 TCTCGGGCGT GCTGTACGAC AGCGGCGCGG GCGGCGGCAC GGCCATCGCC GGCTCGGTGG 181 AGGCGGTGGC CAGACTGAAG CGTTCCCGGC TGAAGGTGAG GTTCTGCACC AACGAGTCGC 241 AGAAGTCCCG GGCAGAGCTG GTGGGGCAGC TTCAGAGGCT GGGATTTGAC ATCTCTGAGC 301 AGGAGGTGAC CGCCCCGGCA CCAGCTGCCT GCCAGATCCT GAAGGAGCGA GGCCTGCGAC 361 CATACCTGCT CATCCATGAC GGAGTCCGCT CAGAATTTGA TCAGATCGAC ACATCCAACC 421 CAAACTGTGT GGTAATTGCA GACGCAGGAG AAAGCTTTTC TTATCAAAAC ATGAATAACG 481 CCTTCCAGGT GCTCATGGAG CTGGAAAAAC CTGTGCTCAT ATCACTGGGA AAAGGGCGTT 541 ACTACAAGGA GACCTCTGGC CTGATGCTGG ACGTTGGTCC CTACATGAAG GCGCTTGAGT 601 ATGCCTGTGG CATCAAAGCC GAGGTGGTGG GGAAGCCTTC TCCTGAGTTT TTCAAGTCTG 661 CCCTGCAAGC GATAGGAGTG GAAGCCCACC AGGCCGTCAT GATTGGGGAC GATATCGTGG 721 GCGACGTCGG CGGTGCCCAG CGGTGTGGAA TGAGAGCGCT GCAGGTGCGC ACCGGGAAGT 781 TCAGGCCCAG TGACGAGCAC CATCCGGAAG TGAAGGCTGA TGGGTACGTG GACAACCTCG 841 CAGAGGCAGT GGACCTGCTG CTGCAGCACG CCGACAAGTT GCCAACTTTC TTGTACAAAG 901 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac