Construct: ORF ccsbBroadEn_08832

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016234.1_s300c1, BRDN0000397904
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PARVG (64098)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64098 PARVG parvin gamma NM_001137605.2 99.8% 100% 919A>C
2 human 64098 PARVG parvin gamma NM_022141.7 99.8% 100% 919A>C
3 human 64098 PARVG parvin gamma XM_005261702.3 99.8% 100% 919A>C
4 human 64098 PARVG parvin gamma XM_017028907.1 91.6% 87.3% (many diffs)
5 human 64098 PARVG parvin gamma XM_017028908.1 91.6% 87.3% (many diffs)
6 human 64098 PARVG parvin gamma XM_011530302.2 83% 83.1% 1_201del;1120A>C
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1059
ORF length:
993
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GCCGGAGTTC TTGTACGACC TGCTGCAGCT CCCCAAGGGG GTGGAGCCCC
121CAGCGGAGGA GGAGCTCTCA AAAGGAGGAA AGAAGAAATA CCTGCCACCC ACTTCCCGGA
181AGGACCCCAA ATTTGAAGAA CTGCAGAAGG TGTTGATGGA GTGGATCAAT GCCACTCTTC
241TCCCCGAGCA CATTGTGGTC CGCAGCCTGG AGGAGGACAT GTTCGACGGG CTCATCCTAC
301ACCACCTATT CCAGAGGCTG GCGGCGCTCA AGCTGGAAGC AGAGGACATC GCCCTGACAG
361CCACAAGCCA GAAGCACAAG CTCACAGTGG TGCTGGAGGC CGTGAACCGG AGTCTGCAGC
421TGGAGGAGTG GCAGGCCAAG TGGAGCGTGG AGAGCATCTT CAACAAGGAC CTGTTGTCTA
481CCCTGCACCT CCTTGTGGCC CTGGCCAAGC GCTTCCAGCC CGACCTCTCC CTCCCAACCA
541ACGTCCAGGT GGAGGTCATC ACTATCGAGA GCACCAAAAG TGGTCTGAAG TCAGAGAAGT
601TGGTGGAACA GCTCACTGAA TACAGCACAG ACAAGGACGA GCCTCCAAAG GACGTCTTTG
661ATGAATTATT TAAGCTGGCT CCGGAGAAAG TGAACGCAGT GAAAGAGGCC ATCGTGAACT
721TTGTCAACCA GAAGCTGGAC CGCCTGGGCC TGTCTGTGCA GAATCTGGAC ACCCAGTTTG
781CAGATGGGGT CATCTTACTC TTGCTGATTG GACAACTTGA AGGCTTCTTC CTGCACTTAA
841AGGAATTCTA CCTCACTCCC AACTCTCCTG CAGAAATGCT GCACAACGTC ACCCTGGCGC
901TGGAGCTGCT GAAGGACGAG GGCCTGCTCA GCTGCCCTGT CAGCCCTGAA GATATCGTGA
961ACAAGGATGC CAAGAGCACA CTGCGGGTGC TCTATGGTCT GTTCTGCAAG CACACGCAGA
1021AGGCACACAG GGACAGGACG CCCCATGGAG CCCCGAATTG CCCAACTTTC TTGTACAAAG
1081Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)