Construct: ORF ccsbBroadEn_08832
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016234.1_s300c1, BRDN0000397904
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PARVG (64098)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64098 | PARVG | parvin gamma | NM_001137605.2 | 99.8% | 100% | 919A>C |
| 2 | human | 64098 | PARVG | parvin gamma | NM_022141.7 | 99.8% | 100% | 919A>C |
| 3 | human | 64098 | PARVG | parvin gamma | XM_005261702.3 | 99.8% | 100% | 919A>C |
| 4 | human | 64098 | PARVG | parvin gamma | XM_017028907.1 | 91.6% | 87.3% | (many diffs) |
| 5 | human | 64098 | PARVG | parvin gamma | XM_017028908.1 | 91.6% | 87.3% | (many diffs) |
| 6 | human | 64098 | PARVG | parvin gamma | XM_011530302.2 | 83% | 83.1% | 1_201del;1120A>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1059
- ORF length:
- 993
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GCCGGAGTTC TTGTACGACC TGCTGCAGCT CCCCAAGGGG GTGGAGCCCC 121 CAGCGGAGGA GGAGCTCTCA AAAGGAGGAA AGAAGAAATA CCTGCCACCC ACTTCCCGGA 181 AGGACCCCAA ATTTGAAGAA CTGCAGAAGG TGTTGATGGA GTGGATCAAT GCCACTCTTC 241 TCCCCGAGCA CATTGTGGTC CGCAGCCTGG AGGAGGACAT GTTCGACGGG CTCATCCTAC 301 ACCACCTATT CCAGAGGCTG GCGGCGCTCA AGCTGGAAGC AGAGGACATC GCCCTGACAG 361 CCACAAGCCA GAAGCACAAG CTCACAGTGG TGCTGGAGGC CGTGAACCGG AGTCTGCAGC 421 TGGAGGAGTG GCAGGCCAAG TGGAGCGTGG AGAGCATCTT CAACAAGGAC CTGTTGTCTA 481 CCCTGCACCT CCTTGTGGCC CTGGCCAAGC GCTTCCAGCC CGACCTCTCC CTCCCAACCA 541 ACGTCCAGGT GGAGGTCATC ACTATCGAGA GCACCAAAAG TGGTCTGAAG TCAGAGAAGT 601 TGGTGGAACA GCTCACTGAA TACAGCACAG ACAAGGACGA GCCTCCAAAG GACGTCTTTG 661 ATGAATTATT TAAGCTGGCT CCGGAGAAAG TGAACGCAGT GAAAGAGGCC ATCGTGAACT 721 TTGTCAACCA GAAGCTGGAC CGCCTGGGCC TGTCTGTGCA GAATCTGGAC ACCCAGTTTG 781 CAGATGGGGT CATCTTACTC TTGCTGATTG GACAACTTGA AGGCTTCTTC CTGCACTTAA 841 AGGAATTCTA CCTCACTCCC AACTCTCCTG CAGAAATGCT GCACAACGTC ACCCTGGCGC 901 TGGAGCTGCT GAAGGACGAG GGCCTGCTCA GCTGCCCTGT CAGCCCTGAA GATATCGTGA 961 ACAAGGATGC CAAGAGCACA CTGCGGGTGC TCTATGGTCT GTTCTGCAAG CACACGCAGA 1021 AGGCACACAG GGACAGGACG CCCCATGGAG CCCCGAATTG CCCAACTTTC TTGTACAAAG 1081 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac