Transcript: Human XM_011530302.2

PREDICTED: Homo sapiens parvin gamma (PARVG), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PARVG (64098)
Length:
4201
CDS:
2776..3972

Additional Resources:

NCBI RefSeq record:
XM_011530302.2
NBCI Gene record:
PARVG (64098)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011530302.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413189 GGACGTCTTTGATGAATTATT pLKO_005 3561 CDS 100% 15.000 21.000 N PARVG n/a
2 TRCN0000455003 AGAATCTGGACACCCAGTTTG pLKO_005 3671 CDS 100% 10.800 7.560 N PARVG n/a
3 TRCN0000122946 GCTCATCCTACACCACCTATT pLKO.1 3201 CDS 100% 10.800 7.560 N PARVG n/a
4 TRCN0000122948 CACTGAATACAGCACAGACAA pLKO.1 3525 CDS 100% 4.950 3.465 N PARVG n/a
5 TRCN0000122945 GTCATCTTACTCTTGCTGATT pLKO.1 3700 CDS 100% 4.950 3.465 N PARVG n/a
6 TRCN0000122947 GAAGGCTTCTTCCTGCACTTA pLKO.1 3730 CDS 100% 4.950 2.970 N PARVG n/a
7 TRCN0000122944 CCTCCCACAGTCCCGCTGTTT pLKO.1 4041 3UTR 100% 0.000 0.000 N PARVG n/a
8 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 1006 5UTR 100% 4.950 2.475 Y ERAP2 n/a
9 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1007 5UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011530302.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08832 pDONR223 100% 83% 83.1% None 1_201del;1120A>C n/a
2 ccsbBroad304_08832 pLX_304 0% 83% 83.1% V5 1_201del;1120A>C n/a
3 TRCN0000470993 TTCCAATAACGCTAAGACGACGGG pLX_317 42% 83% 83.1% V5 1_201del;1120A>C n/a
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