Construct: ORF ccsbBroadEn_08836

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010872.1_s300c1, BRDN0000393621
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMBIM1 (64114)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_001321427.1 99.8% 99.6% 62C>T
2 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_001321428.1 99.8% 99.6% 62C>T
3 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_001321429.1 99.8% 99.6% 62C>T
4 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_001321430.1 99.8% 99.6% 62C>T
5 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_001321432.1 99.8% 99.6% 62C>T
6 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_001321433.1 99.8% 99.6% 62C>T
7 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_001321435.1 99.8% 99.6% 62C>T
8 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_001321436.1 99.8% 99.6% 62C>T
9 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_022152.6 99.7% 99.6% 62C>T;237A>G
10 human 64114 TMBIM1 transmembrane BAX inhibitor... XM_011511627.1 99.7% 99.6% 62C>T;237A>G
11 human 64114 TMBIM1 transmembrane BAX inhibitor... NM_001321438.1 64.3% 60.7% 0_1ins268;35_36ins65
12 human 64114 TMBIM1 transmembrane BAX inhibitor... NR_135643.1 35.9% (many diffs)
13 mouse 69660 Tmbim1 transmembrane BAX inhibitor... NM_027154.5 84.6% 88.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
999
ORF length:
933
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CAACCCCAGC GCCCCACCAC CATATGAAGA CCGCAACCCC CTGTACCCAG
121GCCCTCTGCC CCCTGGGGGC TATGGGCAGC CATCTGTCCT GCCAGGAGGG TATCCTGCCT
181ACCCTGGCTA CCCGCAGCCT GGCTACGGTC ACCCTGCTGG CTACCCACAG CCCATGCCCC
241CCACCCACCC GATGCCCATG AACTACGGCC CAGGCCATGG CTATGATGGG GAGGAGAGAG
301CGGTGAGTGA TAGCTTCGGG CCTGGAGAGT GGGATGACCG GAAAGTGCGA CACACTTTTA
361TCCGAAAGGT TTACTCCATC ATCTCCGTGC AGCTGCTCAT CACTGTGGCC ATCATTGCTA
421TCTTCACCTT TGTGGAACCT GTCAGCGCCT TTGTGAGGAG AAATGTGGCT GTCTACTACG
481TGTCCTATGC TGTCTTCGTT GTCACCTACC TGATCCTTGC CTGCTGCCAG GGACCCAGAC
541GCCGTTTCCC ATGGAACATC ATTCTGCTGA CCCTTTTTAC TTTTGCCATG GGCTTCATGA
601CGGGCACCAT TTCCAGTATG TACCAAACCA AAGCCGTCAT CATTGCAATG ATCATCACTG
661CGGTGGTATC CATTTCAGTC ACCATCTTCT GCTTTCAGAC CAAGGTGGAC TTCACCTCGT
721GCACAGGCCT CTTCTGTGTC CTGGGAATTG TGCTCCTGGT GACTGGGATT GTCACTAGCA
781TTGTGCTCTA CTTCCAATAC GTTTACTGGC TCCACATGCT CTATGCTGCT CTGGGGGCCA
841TTTGTTTCAC CCTGTTCCTG GCTTACGACA CACAGCTGGT CCTGGGGAAC CGGAAGCACA
901CCATCAGCCC CGAGGACTAC ATCACTGGCG CCCTGCAGAT TTACACAGAC ATCATCTACA
961TCTTCACCTT TGTGCTGCAG CTGATGGGGG ATCGCAATTG CCCAACTTTC TTGTACAAAG
1021Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)