Construct: ORF ccsbBroadEn_08940
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003628.1_s300c1, BRDN0000388825
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARMC7 (79637)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79637 | ARMC7 | armadillo repeat containing 7 | NM_024585.4 | 99.8% | 99.4% | 593G>T |
| 2 | human | 79637 | ARMC7 | armadillo repeat containing 7 | NM_001304271.2 | 52% | 32.5% | 170_171ins64;309_310ins221 |
| 3 | human | 79637 | ARMC7 | armadillo repeat containing 7 | NM_001304272.2 | 48.2% | 41.2% | (many diffs) |
| 4 | human | 79637 | ARMC7 | armadillo repeat containing 7 | NM_001304273.2 | 40.8% | 39.3% | (many diffs) |
| 5 | human | 79637 | ARMC7 | armadillo repeat containing 7 | XR_002958068.1 | 25.8% | (many diffs) | |
| 6 | mouse | 276905 | Armc7 | armadillo repeat containing 7 | XM_017314579.1 | 34.1% | 36.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 660
- ORF length:
- 594
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAA 61 TTGGCATGGC CCAGAAGCCG AAGGTGGACC CCCACGTCGG GCGGCTGGGA TACCTGCAGG 121 CGCTGGTCAC GGAATTCCAG GAGACCCAAA GCCAAGACGC CAAGGAGCAA GTCCTCGCCA 181 ACCTCGCCAA CTTCGCTTAT GACCCCAGCA ACTACGAGTA TCTGCGGCAG CTGCAGGTCC 241 TGGATTTATT TCTCGATTCG CTGTCGGAGG AGAATGAGAC CCTGGTGGAG TTTGCTATTG 301 GAGGCCTGTG CAACCTGTGC CCAGACAGGG CCAACAAGGA GCACATCCTG CACGCAGGAG 361 GTGTCCCACT CATCATCAAC TGCCTATCCA GCCCCAATGA GGAGACGGTG CTGTCTGCCA 421 TCACCACGCT CATGCACCTG AGCCCGCCGG GCCGCAGCTT TCTCCCAGAG CTGACCGCCA 481 CGCCCGTGGT GCAGTGCATG CTTCGCTTCT CCCTCTCGGC CAGCGCCAGG CTCCGGAACC 541 TGGCACAGAT CTTCCTGGAG GACTTCTGCT CCCCCCGCCA GGTGGCCGAG GCCCGCAGCC 601 GGCAGGCGCA CTCTGCCCTG GGTATCCCAC TGCCGAGGAG CGTGGCCCCA CGGCAGCTCT 661 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 721 acgaac