Construct: ORF ccsbBroadEn_08953
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011856.1_s300c1, BRDN0000395939
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF419 (79744)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_024691.4 | 99.8% | 99.6% | 198G>C;421G>C;1006A>G |
| 2 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_001098491.2 | 99.6% | 99.4% | (many diffs) |
| 3 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_001098492.2 | 97.3% | 97% | (many diffs) |
| 4 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_001098493.2 | 97.2% | 97% | (many diffs) |
| 5 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_001291743.2 | 93.3% | 93.1% | 198_198delGins100;322G>C;907A>G |
| 6 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_001098494.2 | 93.1% | 92.9% | (many diffs) |
| 7 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_001098495.2 | 90.9% | 90.5% | (many diffs) |
| 8 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_001098496.2 | 90.7% | 90.5% | (many diffs) |
| 9 | human | 374928 | ZNF773 | zinc finger protein 773 | NM_198542.3 | 83.1% | 79.4% | (many diffs) |
| 10 | human | 374928 | ZNF773 | zinc finger protein 773 | NM_001304334.1 | 83% | 79.4% | (many diffs) |
| 11 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_001291744.2 | 82.5% | 82.3% | (many diffs) |
| 12 | human | 79744 | ZNF419 | zinc finger protein 419 | NM_001291745.2 | 20.5% | 17.4% | (many diffs) |
| 13 | human | 374928 | ZNF773 | zinc finger protein 773 | NM_001304335.2 | 20.3% | 16.9% | (many diffs) |
| 14 | human | 79744 | ZNF419 | zinc finger protein 419 | XM_024451720.1 | 20% | 18% | (many diffs) |
| 15 | human | 374928 | ZNF773 | zinc finger protein 773 | NM_001304336.1 | 19.2% | 17.4% | (many diffs) |
| 16 | human | 374928 | ZNF773 | zinc finger protein 773 | NM_001304337.2 | 18.5% | 17.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1596
- ORF length:
- 1530
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGGCCGCC CTGAGGGACC CCGCTCAGGT TCCTGTGGCT GCAGACTTGC 121 TTACAGACCA TGAGGAGGGC TATGTGACCT TTGAGGATGT GGCTGTCTAC TTCTCCCAGG 181 AGGAATGGAG ATTGCTTGAT GACGCTCAGA GGCTCCTCTA CCGCAATGTG ATGCTGGAGA 241 ACTTTACACT TCTGGCCTCT CTCGGACTTG CATCTTCCAA GACCCATGAA ATAACCCAGC 301 TGGAGTCATG GGAGGAGCCC TTCATGCCTG CTTGGGAAGT TGTGACTTCA GCCATACCGA 361 GAGGTTGTTG GCATGGAGCC GAGGCTGAGG AGGCTCCTGA GCAGATTGCT TCTGTAGGAC 421 TGCTCAGTTC AAACATTCAG CAACACCAGA AGCAGCACTG TGGAGAGAAA CCCTTAAAAA 481 GACAACAGGG CAGGGTCCCA GTTTTGAGGA GTTGCAAAGT TCACCTATCA GAGAAGTCCT 541 TGCAAAGCAG GGAGGTTGGG AAGGCCCTCC TGATCAGCTC AGGTGTTCTC AAGCACCAGG 601 TGACTCACAC AGGAGAGAAG TCACATAGGA GCTCCAAAAG TAGGGAGGCC TTTCATGCTG 661 GAAAAAGGCA TTACAAATGC AGTGAATGTG GGAAAGCCTT TGGTCAGAAA TATTTACTTG 721 TTCAGCACCA GAGACTACAT GCTGGGAAAA AGACGTATGA ATGCAGTGAA TGTGGGAAGT 781 TATTTAGAGA TATGTCCAAC CTTTTTATAC ACCAAATAGT TCACACTGGA GAAAGGCCTT 841 ACGGGTGTAG TAACTGTGGA AAATCCTTTA GCCGTAATGC TCACCTCATT GAACACCAGA 901 GAGTTCACAC TGGAGAAAAG CCTTTTACAT GCAGTGAATG TGGAAAAGCT TTCAGGCATA 961 ATTCCACACT TGTTCAGCAT CACAAAATCC ACACTGGAGT AAGGCCTTAT GAGTGCAGTG 1021 AATGTGGAAA ATTGTTTAGT TTCAACTCCA GCCTCATGAA ACATCAGAGA GTTCACACTG 1081 GAGAAAGACC TTATAAGTGC AGTGAATGTG GAAAATTCTA TAGCCACAAG TCCAACCTTA 1141 TCAAACATTG GCGTGTTCAT ACTGGAGAAA GGCCTTACAA GTGCAGCGAC TGTGGGAAAT 1201 TTTTTACCCA ATGCTCAAGC CTCATGCAAC ATCAAAAAGT TCACACTGGA GAAAAGCCTT 1261 TTAAGTGCAA TGAATGTGGG AGATTCTTTA GAGAGAATTC CACCCTAGTT AGACATCAGA 1321 GGGTTCACAC TGGAGCAAAG CCTTATGAGT GCAGGGAATG TGGGAAATTT TTTAGCCAAA 1381 GCTCAACCCT CATGCAACAT CGAAAAGTTC ACATTGGAGA AAAGCCTTTT AAGTGCAATG 1441 AATGTGGGAG ATTGTTTAGA GAGAATTCCA GCCTTGTTAA ACATCAGAGG GTTCACACTG 1501 GAGCAAAGCC TTATGAGTGC AGGGAATGTG GGAAGTTTTT TCGCCACAAC TCCAGTCTTT 1561 TTAAACATCG AAGGATTCAC ACTGGAGAAA TGCAGTGCCC AACTTTCTTG TACAAAGTtg 1621 gcattataag aaagcattgc ttatcaattt gttgcaacga ac