Transcript: Human NM_198542.3

Homo sapiens zinc finger protein 773 (ZNF773), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
ZNF773 (374928)
Length:
2277
CDS:
144..1472

Additional Resources:

NCBI RefSeq record:
NM_198542.3
NBCI Gene record:
ZNF773 (374928)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_198542.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415743 GCCTTAGACTGTCGCTGAATC pLKO_005 1693 3UTR 100% 10.800 7.560 N ZNF773 n/a
2 TRCN0000416763 ACCGTATTCAACACCAGAAAG pLKO_005 1656 3UTR 100% 10.800 6.480 N ZNF773 n/a
3 TRCN0000107858 CCAGTCTTGTTAAACATCGAA pLKO.1 1426 CDS 100% 3.000 1.800 N ZNF773 n/a
4 TRCN0000107857 GCAGTGAATGTGGGAAGTTAT pLKO.1 805 CDS 100% 13.200 6.600 Y ZNF773 n/a
5 TRCN0000107855 CACCAGAAAGTTCACAGTGTA pLKO.1 1513 3UTR 100% 4.950 2.475 Y ZNF773 n/a
6 TRCN0000107859 GCATCTTCCAAGACCCATGAA pLKO.1 312 CDS 100% 4.950 2.475 Y ZNF773 n/a
7 TRCN0000017482 CGAAGGATTCACACTGGAGAA pLKO.1 1443 CDS 100% 4.050 2.025 Y ZNF419 n/a
8 TRCN0000012945 GCAGTGAATGTGGGAAAGCTT pLKO.1 721 CDS 100% 3.000 1.500 Y ZNF146 n/a
9 TRCN0000142544 GCAGGAGATTTGCTTGAACCT pLKO.1 2093 3UTR 100% 2.640 1.320 Y TCTA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198542.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08953 pDONR223 100% 83.1% 79.4% None (many diffs) n/a
2 ccsbBroad304_08953 pLX_304 0% 83.1% 79.4% V5 (many diffs) n/a
3 TRCN0000467158 GTGTAGGAGTTCGCCGCGGACCGG pLX_317 24.8% 83.1% 79.4% V5 (many diffs) n/a
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