Construct: ORF ccsbBroadEn_08982
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008847.1_s300c1, BRDN0000388280
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- NAA60 (79903)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79903 | NAA60 | N(alpha)-acetyltransferase ... | NM_001083600.3 | 99.8% | 100% | 552C>G |
| 2 | human | 79903 | NAA60 | N(alpha)-acetyltransferase ... | NM_001083601.3 | 99.8% | 100% | 552C>G |
| 3 | human | 79903 | NAA60 | N(alpha)-acetyltransferase ... | NM_024845.4 | 99.8% | 100% | 552C>G |
| 4 | human | 79903 | NAA60 | N(alpha)-acetyltransferase ... | NM_001317093.1 | 87.8% | 79.6% | (many diffs) |
| 5 | human | 79903 | NAA60 | N(alpha)-acetyltransferase ... | NM_001317095.2 | 73% | 73.1% | 0_1ins195;357C>G |
| 6 | human | 79903 | NAA60 | N(alpha)-acetyltransferase ... | NM_001317096.2 | 62.4% | 40.6% | (many diffs) |
| 7 | human | 79903 | NAA60 | N(alpha)-acetyltransferase ... | NM_001317094.2 | 55.2% | 54.9% | 240_241ins229;244C>A;248_249ins95 |
| 8 | human | 79903 | NAA60 | N(alpha)-acetyltransferase ... | NM_001317097.2 | 51.2% | 50.5% | 335_336ins298;429_537del |
| 9 | human | 79903 | NAA60 | N(alpha)-acetyltransferase ... | NM_001317098.2 | 51.2% | 50.5% | 335_336ins298;429_537del |
| 10 | mouse | 74763 | Naa60 | N(alpha)-acetyltransferase ... | NM_029090.3 | 93.1% | 97.1% | (many diffs) |
| 11 | mouse | 74763 | Naa60 | N(alpha)-acetyltransferase ... | XM_006522679.1 | 93.1% | 97.1% | (many diffs) |
| 12 | mouse | 74763 | Naa60 | N(alpha)-acetyltransferase ... | XM_006522680.2 | 93.1% | 97.1% | (many diffs) |
| 13 | mouse | 74763 | Naa60 | N(alpha)-acetyltransferase ... | NM_001290689.1 | 66.9% | 70.2% | (many diffs) |
| 14 | mouse | 74763 | Naa60 | N(alpha)-acetyltransferase ... | XM_011246038.2 | 66.9% | 70.2% | (many diffs) |
| 15 | mouse | 74763 | Naa60 | N(alpha)-acetyltransferase ... | XM_017317155.1 | 52% | 48.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 792
- ORF length:
- 726
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC AGAGGTGGTG CCATCCAGCG CGCTCAGCGA GGTCAGCCTG CGCCTCCTCT 121 GCCACGATGA CATAGACACT GTGAAGCACC TGTGTGGCGA CTGGTTCCCC ATCGAGTACC 181 CAGACTCATG GTATCGTGAT ATCACATCCA ACAAGAAGTT CTTTTCCCTT GCTGCAACCT 241 ACAGAGGTGC CATTGTGGGA ATGATAGTAG CTGAAATTAA GAACAGGACC AAAATACATA 301 AAGAGGATGG AGATATTCTA GCATCCAACT TCTCTGTTGA CACACAAGTC GCGTACATCC 361 TAAGTCTGGG CGTCGTGAAA GAGTTCAGGA AGCACGGCAT AGGTTCCCTC TTACTTGAAA 421 GTTTAAAGGA TCACATATCA ACCACCGCCC AGGACCACTG CAAAGCCATT TACCTGCATG 481 TCCTCACCAC CAACAACACA GCAATAAACT TCTATGAAAA CAGAGACTTC AAGCAGCACC 541 ACTATCTCCC CTATTACTAC TCCATTCGAG GGGTCCTCAA AGATGGCTTC ACCTATGTCC 601 TCTACATCAA CGGCGGGCAC CCTCCCTGGA CGATTTTGGA CTACATCCAG CACCTGGGCT 661 CTGCACTAGC CAGCCTGAGC CCCTGCTCCA TTCCGCACAG AGTCTACCGC CAGGCCCACA 721 GCCTGCTCTG CAGCTTCCTG CCATGGTCGG GCATCTCTTC CAAGAGTGGC ATCGAGTACA 781 GCCGGACCAT GTGACCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 841 caatttgttg caacgaac