Construct: ORF ccsbBroadEn_09047
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008534.1_s300c1, BRDN0000392375
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- THAP7 (80764)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80764 | THAP7 | THAP domain containing 7 | NM_001008695.1 | 99.8% | 99.6% | 343G>C |
| 2 | human | 80764 | THAP7 | THAP domain containing 7 | NM_030573.3 | 99.8% | 99.6% | 343G>C |
| 3 | mouse | 69009 | Thap7 | THAP domain containing 7 | NM_026909.2 | 89.1% | 93.2% | (many diffs) |
| 4 | mouse | 69009 | Thap7 | THAP domain containing 7 | XM_006522511.3 | 89.1% | 93.2% | (many diffs) |
| 5 | mouse | 69009 | Thap7 | THAP domain containing 7 | XM_006522512.3 | 75.5% | 79.2% | (many diffs) |
| 6 | mouse | 69009 | Thap7 | THAP domain containing 7 | XM_006522513.3 | 73.4% | 77% | (many diffs) |
| 7 | mouse | 69009 | Thap7 | THAP domain containing 7 | XM_011246003.2 | 60.3% | 62.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 993
- ORF length:
- 927
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC GCGTCACTGC TCCGCCGCCG GCTGCTGCAC ACGGGACACG CGCGAGACGC 121 GCAACCGCGG CATCTCCTTC CACAGACTTC CCAAGAAGGA CAACCCGAGG CGAGGCTTGT 181 GGCTGGCCAA CTGCCAGCGG CTGGACCCCA GCGGCCAGGG CCTGTGGGAC CCGGCATCCG 241 AGTACATCTA CTTCTGCTCC AAACACTTTG AGGAGGACTG CTTTGAGCTG GTGGGAATCA 301 GTGGATATCA CAGGCTAAAG GAGGGGGCAG TCCCCACCAT ATTTGAGTCT TTCTCCAAGT 361 TGCGCCGGAC AACCAAGACC AAAGGACACA GTTACCCACC TGGCCCCCCT GAAGTCAGCC 421 GGCTCAGACG ATGCAGGAAG CGCTGCTCCG AGGGCCGAGG GCCCACAACT CCATTTTCTC 481 CACCTCCACC TGCTGATGTC ACCTGCTTTC CTGTGGAAGA GGCCTCAGCA CCTGCCACTT 541 TGCCGGCCTC CCCAGCTGGG AGGCTGGAGC CTGGCCTTAG CAGCCCCTTT TCAGACCTAC 601 TGGGCCCCTT GGGTGCCCAG GCAGATGAAG CAGGCTGCAG CGCCCAGCCT TCACCAGAGC 661 GGCAGCCCTC CCCTCTCGAA CCACGGCCAG TCTCCCCCTC AGCGTATATG CTGCGCCTGC 721 CCCCACCCGC CGGAGCCTAC ATCCAGAATG AACACAGCTA CCAGGTGGGC AGCGCCTTAC 781 TCTGGAAGCG GCGAGCCGAG GCAGCCCTTG ATGCCCTTGA CAAGGCCCAG CGCCAGCTGC 841 AGGCCTGCAA GCGGCGGGAG CAGCGGCTGC GGTTGAGACT GACCAAGCTG CAGCAGGAGC 901 GGGCACGGGA GAAGCGGGCA CAGGCAGATG CCCGCCAGAC TCTGAAGGAG CATGTGCAGG 961 ACTTTGCCAT GCAGCTGAGC AGCAGCATGG CCTGCCCAAC TTTCTTGTAC AAAGTtggca 1021 ttataagaaa gcattgctta tcaatttgtt gcaacgaac