Transcript: Human NM_030573.3

Homo sapiens THAP domain containing 7 (THAP7), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
THAP7 (80764)
Length:
1913
CDS:
208..1137

Additional Resources:

NCBI RefSeq record:
NM_030573.3
NBCI Gene record:
THAP7 (80764)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_030573.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163644 GCATCCGAGTACATCTACTTC pLKO.1 376 CDS 100% 4.950 6.930 N THAP7 n/a
2 TRCN0000319131 GCATCCGAGTACATCTACTTC pLKO_005 376 CDS 100% 4.950 6.930 N THAP7 n/a
3 TRCN0000277406 CCCACCATATTTGAGTCTTTC pLKO_005 475 CDS 100% 10.800 7.560 N Thap7 n/a
4 TRCN0000164282 CAGACTTCCCAAGAAGGACAA pLKO.1 285 CDS 100% 4.050 2.835 N THAP7 n/a
5 TRCN0000297931 CAGACTTCCCAAGAAGGACAA pLKO_005 285 CDS 100% 4.050 2.835 N THAP7 n/a
6 TRCN0000159463 CATATTTGAGTCTTTCTCCAA pLKO.1 480 CDS 100% 2.640 1.848 N THAP7 n/a
7 TRCN0000281098 CATATTTGAGTCTTTCTCCAA pLKO_005 480 CDS 100% 2.640 1.848 N THAP7 n/a
8 TRCN0000161917 GTACATCTACTTCTGCTCCAA pLKO.1 384 CDS 100% 2.640 1.848 N THAP7 n/a
9 TRCN0000281030 GTACATCTACTTCTGCTCCAA pLKO_005 384 CDS 100% 2.640 1.848 N THAP7 n/a
10 TRCN0000163021 GAATGAACACAGCTACCAGGT pLKO.1 888 CDS 100% 2.160 1.512 N THAP7 n/a
11 TRCN0000281096 GAATGAACACAGCTACCAGGT pLKO_005 888 CDS 100% 2.160 1.512 N THAP7 n/a
12 TRCN0000162919 GACAACCAAGACCAAAGGACA pLKO.1 510 CDS 100% 2.640 1.584 N THAP7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_030573.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09047 pDONR223 100% 99.8% 99.6% None 343G>C n/a
2 ccsbBroad304_09047 pLX_304 0% 99.8% 99.6% V5 343G>C n/a
3 TRCN0000471858 TGGAAACACGTAGACCCTTGCCTC pLX_317 41.7% 99.8% 99.6% V5 343G>C n/a
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