Transcript: Mouse XM_006522512.3

PREDICTED: Mus musculus THAP domain containing 7 (Thap7), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Thap7 (69009)
Length:
1317
CDS:
300..1088

Additional Resources:

NCBI RefSeq record:
XM_006522512.3
NBCI Gene record:
Thap7 (69009)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006522512.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000193015 GCTGGCCAAATGTTACAATAA pLKO.1 1159 3UTR 100% 13.200 9.240 N Thap7 n/a
2 TRCN0000277336 ATGCAGTTGAGCAGCAGTATG pLKO_005 1062 CDS 100% 10.800 7.560 N Thap7 n/a
3 TRCN0000189578 CCACAGACTTCCCAAGAAAGA pLKO.1 374 CDS 100% 4.950 3.465 N Thap7 n/a
4 TRCN0000277404 CCACAGACTTCCCAAGAAAGA pLKO_005 374 CDS 100% 4.950 3.465 N Thap7 n/a
5 TRCN0000277339 GATCCGACCTCTGAGTACATC pLKO_005 462 CDS 100% 4.950 3.465 N Thap7 n/a
6 TRCN0000202347 GCTCCAAACACTTCGAGGAAA pLKO.1 490 CDS 100% 4.950 3.465 N Thap7 n/a
7 TRCN0000202290 GAAGGACCATGTACAGGACTT pLKO.1 1037 CDS 100% 4.050 2.835 N Thap7 n/a
8 TRCN0000277337 GAAGGACCATGTACAGGACTT pLKO_005 1037 CDS 100% 4.050 2.835 N Thap7 n/a
9 TRCN0000161917 GTACATCTACTTCTGCTCCAA pLKO.1 476 CDS 100% 2.640 1.848 N THAP7 n/a
10 TRCN0000281030 GTACATCTACTTCTGCTCCAA pLKO_005 476 CDS 100% 2.640 1.848 N THAP7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006522512.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09047 pDONR223 100% 75.5% 79.2% None (many diffs) n/a
2 ccsbBroad304_09047 pLX_304 0% 75.5% 79.2% V5 (many diffs) n/a
3 TRCN0000471858 TGGAAACACGTAGACCCTTGCCTC pLX_317 41.7% 75.5% 79.2% V5 (many diffs) n/a
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