Construct: ORF ccsbBroadEn_09053

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009378.1_s300c1, BRDN0000394839
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DUSP16 (80824)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80824 DUSP16 dual specificity phosphatas... NM_030640.3 99.8% 99.8% 1419C>T;1511A>T
2 human 80824 DUSP16 dual specificity phosphatas... XM_006719155.2 99.8% 99.8% 1419C>T;1511A>T
3 human 80824 DUSP16 dual specificity phosphatas... XM_011520856.1 99.8% 99.8% 1419C>T;1511A>T
4 human 80824 DUSP16 dual specificity phosphatas... XM_005253488.3 77.6% 72% (many diffs)
5 human 80824 DUSP16 dual specificity phosphatas... XM_017019988.1 77.6% 72% (many diffs)
6 mouse 70686 Dusp16 dual specificity phosphatas... NM_130447.3 88% 90.5% (many diffs)
7 mouse 70686 Dusp16 dual specificity phosphatas... NM_001048054.2 47% 49.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2064
ORF length:
1995
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCCATGAG ATGATTGGAA CTCAAATTGT TACTGAGAGG TTGGTGGCTC
121TGCTGGAAAG TGGAACGGAA AAAGTGCTGC TAATTGATAG CCGGCCATTT GTGGAATACA
181ATACATCCCA CATTTTGGAA GCCATTAATA TCAACTGCTC CAAGCTTATG AAGCGAAGGT
241TGCAACAGGA CAAAGTGTTA ATTACAGAGC TCATCCAGCA TTCAGCGAAA CATAAGGTTG
301ACATTGATTG CAGTCAGAAG GTTGTAGTTT ACGATCAAAG CTCCCAAGAT GTTGCCTCTC
361TCTCTTCAGA CTGTTTTCTC ACTGTACTTC TGGGTAAACT GGAGAAGAGC TTCAACTCTG
421TTCACCTGCT TGCAGGTGGG TTTGCTGAGT TCTCTCGTTG TTTCCCTGGC CTCTGTGAAG
481GAAAATCCAC TCTAGTCCCT ACCTGCATTT CTCAGCCTTG CTTACCTGTT GCCAACATTG
541GGCCAACCCG AATTCTTCCC AATCTTTATC TTGGCTGCCA GCGAGATGTC CTCAACAAGG
601AGCTGATGCA GCAGAATGGG ATTGGTTATG TGTTAAATGC CAGCAATACC TGTCCAAAGC
661CTGACTTTAT CCCCGAGTCT CATTTCCTGC GTGTGCCTGT GAATGACAGC TTTTGTGAGA
721AAATTTTGCC GTGGTTGGAC AAATCAGTAG ATTTCATTGA GAAAGCAAAA GCCTCCAATG
781GATGTGTTCT AGTGCACTGT TTAGCTGGGA TCTCCCGCTC CGCCACCATC GCTATCGCCT
841ACATCATGAA GAGGATGGAC ATGTCTTTAG ATGAAGCTTA CAGATTTGTG AAAGAAAAAA
901GACCTACTAT ATCTCCAAAC TTCAATTTTC TGGGCCAACT CCTGGACTAT GAGAAGAAGA
961TTAAGAACCA GACTGGAGCA TCAGGGCCAA AGAGCAAACT CAAGCTGCTG CACCTGGAGA
1021AGCCAAATGA ACCTGTCCCT GCTGTCTCAG AGGGTGGACA GAAAAGCGAG ACGCCCCTCA
1081GTCCACCCTG TGCCGACTCT GCTACCTCAG AGGCAGCAGG ACAAAGGCCC GTGCATCCCG
1141CCAGCGTGCC CAGCGTGCCC AGCGTGCAGC CGTCGCTGTT AGAGGACAGC CCGCTGGTAC
1201AGGCGCTCAG TGGGCTGCAC CTGTCCGCAG ACAGGCTGGA AGACAGCAAT AAGCTCAAGC
1261GTTCCTTCTC TCTGGATATC AAATCAGTTT CATATTCAGC CAGCATGGCA GCATCCTTAC
1321ATGGCTTCTC CTCATCAGAA GATGCTTTGG AATACTACAA ACCTTCCACT ACTCTGGATG
1381GGACCAACAA GCTATGCCAG TTCTCCCCTG TTCAGGAACT ATCGGAGCAG ACTCCCGAAA
1441CCAGTCCTGA TAAGGAGGAA GCCAGCATCC CCAAGAAGCT GCAGACTGCC AGGCCTTCAG
1501ACAGCCAGAG CAAGCGATTG CATTCGGTCA GAACCAGCAG CAGTGGCACC GCCCAGAGGT
1561CCCTTTTATC TCCACTGCTT CGAAGTGGGA GCGTGGAGGA CAATTACCAC ACCAGCTTCC
1621TTTTCGGCCT TTCCACCAGC CAGCAGCACC TCACGAAGTC TGCTGGCCTG GGCCTTAAGG
1681GCTGGCACTC GGATATCTTG GCCCCCCAGA CCTCTACCCC TTCCCTGACC AGCAGCTGGT
1741ATTTTGCCAC AGAGTCCTCA CACTTCTACT CTGCCTCAGC CATCTACGGA GGCAGTGCCA
1801GTTACTCTGC CTACAGCTGC AGCCAGCTGC CCACTTGCGG AGACCAAGTC TATTCTGTGC
1861GCAGGCGGCA GAAGCCAAGT GACAGAGCTG ACTCGCGGCG GAGCTGGCAT GAAGAGAGCC
1921CCTTTGAAAA GCAGTTTAAA CGCAGAAGCT GCCAAATGGA ATTTGGAGAG AGCATCATGT
1981CAGAGAACAG GTCACGGGAA GAGCTGGGGA AAGTGGGCAG TCAGTCTAGC TTTTCGGGCA
2041GCATGGAAAT CATTGAGGTC TCCTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa
2101agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)