Construct: ORF ccsbBroadEn_09087
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014021.1_s300c1, BRDN0000455877
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR12D3 (81797)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81797 | OR12D3 | olfactory receptor family 1... | NM_030959.3 | 99.8% | 100% | 240C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1017
- ORF length:
- 948
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGAATGTC ACTACAATGA ATGAGTTTCT TCTACTTGGC CTGACTGGTG 121 TTCAGGAGCT GCAGCCTTTC TTCTTTGGGA TTTTCTTAAT CATTTACCTG ATAAACTTGA 181 TTGGAAATGG ATCTATATTG GTGATGGTTG TTTTGGAACC ACAACTCCAC TCCCCTATGT 241 ATTTTTTTCT GGGAAACCTT TCTTGTCTGG ATATTTCTTA TTCTTCAGTG ACACTGCCCA 301 AGCTGCTTGT AAACCTCGTG TGCAGTCGCA GGGCTATATC TTTTCTAGGC TGTATCACCC 361 AGCTACACTT CTTCCACTTT TTGGGAAGCA CAGAGGCCAT TTTACTGGCT ATCATGGCCT 421 TTGACCGTTT TGTTGCCATC TGCAATCCTC TTCGCTACAC TGTCATCATG AACCCCCAGG 481 TGTGTATTCT GTTGGCAGCT GCGGCCTGGC TCATCAGCTT CTTTTACGCT CTGATGCATT 541 CTGTCATGAC TGCACACCTG AGTTTTTGTG GCTCTCAGAA ACTCAATCAC TTCTTCTACG 601 ATGTCAAGCC GCTCTTAGAA TTGGCCTGTA GTGACACATT ACTCAATCAA TGGCTTCTTT 661 CCATTGTCAC AGGCAGCATA TCCATGGGAG CTTTCTTTCT GACTCTTCTC TCCTGCTTCT 721 ATGTAATTGG CTTCCTTCTG TTTAAGAACA GGTCCTGCAG AATACTCCAC AAGGCTCTGT 781 CCACTTGTGC CTCCCATTTT ATGGTGGTAT GTCTTTTCTA TGGACCTGTG GGCTTCACAT 841 ATATTCGTCC TGCTTCAGCC ACCTCCATGA TTCAGGACCG GATAATGGCC ATCATGTATA 901 GCGCCGTCAC CCCTGTACTG AATCCACTAA TCTACACCCT TAGGAACAAA GAAGTGATGA 961 TGGCTCTGAA GAAAATCTTT GGTAGGAAGT TGTTTAAAGA CTGGCAGCAA CACCACTTGC 1021 CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg 1081 aac