Construct: ORF ccsbBroadEn_09109

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018500.1_s300c1, BRDN0000393264
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FERMT3 (83706)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83706 FERMT3 fermitin family member 3 NM_031471.6 99.9% 100% 729C>T
2 human 83706 FERMT3 fermitin family member 3 XM_017018398.2 99.9% 100% 729C>T
3 human 83706 FERMT3 fermitin family member 3 NM_178443.2 99.3% 99.4% 729C>T;1079_1090del
4 human 83706 FERMT3 fermitin family member 3 XM_011545294.3 99.3% 99.4% 729C>T;1079_1090del
5 human 83706 FERMT3 fermitin family member 3 XM_017018399.1 72.8% 72.8% 0_1ins540;189C>T
6 human 83706 FERMT3 fermitin family member 3 XM_011545295.2 72.3% 72.4% 0_1ins540;189C>T;539_550del
7 mouse 108101 Fermt3 fermitin family member 3 NM_153795.2 86.6% 93.8% (many diffs)
8 mouse 108101 Fermt3 fermitin family member 3 XM_006526593.3 86.6% 93.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2055
ORF length:
1989
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGGGATGAAG ACAGCCTCCG GGGACTACAT CGACTCGTCA TGGGAGCTGC
121GGGTGTTTGT GGGAGAGGAG GACCCAGAGG CCGAGTCGGT CACCCTGCGG GTCACTGGGG
181AGTCGCACAT CGGCGGGGTG CTCCTGAAGA TTGTGGAGCA GATCAATCGC AAGCAGGACT
241GGTCAGACCA TGCTATTTGG TGGGAACAGA AGAGGCAGTG GCTGCTGCAG ACCCACTGGA
301CACTGGACAA GTACGGGATC CTGGCCGACG CACGCCTCTT CTTTGGGCCC CAGCACCGGC
361CCGTCATCCT TCGGTTGCCC AACCGCCGCG CACTGCGCCT CCGTGCCAGC TTCTCCCAGC
421CCCTCTTCCA GGCTGTGGCT GCCATCTGCC GCCTCCTCAG CATCCGGCAC CCCGAGGAGC
481TGTCCCTGCT CCGGGCTCCT GAGAAGAAGG AGAAGAAGAA GAAAGAGAAG GAGCCAGAGG
541AAGAGCTCTA TGACTTGAGC AAGGTTGTCT TGGCTGGGGG CGTGGCACCT GCACTGTTCC
601GGGGGATGCC AGCTCACTTC TCGGACAGCG CCCAGACTGA GGCCTGCTAC CACATGCTGA
661GCCGGCCCCA GCCGCCACCC GACCCCCTCC TGCTCCAGCG TCTGCCACGG CCCAGCTCCC
721TGTCAGACAA GACCCAGCTC CACAGCAGGT GGCTGGACTC GTCGCGGTGT CTCATGCAGC
781AGGGCATCAA GGCTGGGGAC GCACTCTGGC TGCGCTTCAA GTACTACAGC TTCTTCGATT
841TGGATCCCAA GACAGACCCC GTGCGGCTGA CACAGCTGTA TGAGCAGGCC CGGTGGGACC
901TGCTGCTGGA GGAGATTGAC TGCACCGAGG AGGAGATGAT GGTGTTTGCC GCCCTGCAGT
961ACCACATCAA CAAGCTGTCC CAGAGCGGGG AGGTGGGGGA GCCGGCTGGC ACAGACCCAG
1021GGCTGGACGA CCTGGATGTG GCCCTGAGCA ACCTGGAGGT GAAGCTGGAG GGGTCGGCGC
1081CCACAGATGT GCTGGACAGC CTCACCACCA TCCCAGAGCT CAAGGACCAT CTCCGAATCT
1141TTCGGCCCCG GAAGCTGACC CTGAAGGGCT ACCGCCAACA CTGGGTGGTG TTCAAGGAGA
1201CCACACTGTC CTACTACAAG AGCCAGGACG AGGCCCCTGG GGACCCCATT CAGCAGCTCA
1261ACCTCAAGGG CTGTGAGGTG GTTCCCGATG TTAACGTCTC CGGCCAGAAG TTCTGCATTA
1321AACTCCTAGT GCCCTCCCCT GAGGGCATGA GTGAGATCTA CCTGCGGTGC CAGGATGAGC
1381AGCAGTATGC CCGCTGGATG GCTGGCTGCC GCCTGGCCTC CAAAGGCCGC ACCATGGCCG
1441ACAGCAGCTA CACCAGCGAG GTGCAGGCCA TCCTGGCCTT CCTCAGCCTG CAGCGCACGG
1501GCAGTGGGGG CCCGGGCAAC CACCCCCACG GCCCTGATGC CTCTGCCGAG GGCCTCAACC
1561CCTACGGCCT CGTTGCCCCC CGTTTCCAGC GAAAGTTCAA GGCCAAGCAG CTCACCCCAC
1621GGATCCTGGA AGCCCACCAG AATGTGGCCC AGTTGTCGCT GGCAGAGGCC CAGCTGCGCT
1681TCATCCAGGC CTGGCAGTCC CTGCCCGACT TCGGCATCTC CTATGTCATG GTCAGGTTCA
1741AGGGCAGCAG GAAAGACGAG ATCCTGGGCA TCGCCAACAA CCGACTGATC CGCATCGACT
1801TGGCCGTGGG CGACGTGGTC AAGACCTGGC GTTTCAGCAA CATGCGCCAG TGGAATGTCA
1861ACTGGGACAT CCGGCAGGTG GCCATCGAGT TTGATGAACA CATCAATGTG GCCTTCAGCT
1921GCGTGTCTGC CAGCTGCCGA ATTGTACACG AGTATATCGG GGGCTACATT TTCCTGTCGA
1981CGCGGGAGCG GGCCCGTGGG GAGGAGCTGG ATGAAGACCT CTTCCTGCAG CTCACCGGGG
2041GCCATGAGGC CTTCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
2101tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)