Construct: ORF ccsbBroadEn_09114

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010044.1_s300c1, BRDN0000396528
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBM4B (83759)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83759 RBM4B RNA binding motif protein 4B NM_031492.4 99.9% 99.7% 869C>N
2 human 83759 RBM4B RNA binding motif protein 4B XM_011545297.3 99.9% 99.7% 869C>N
3 human 83759 RBM4B RNA binding motif protein 4B XM_017018402.2 99.9% 99.7% 869C>N
4 human 5936 RBM4 RNA binding motif protein 4 NM_002896.3 85.7% 89% (many diffs)
5 human 83759 RBM4B RNA binding motif protein 4B XR_247214.3 53.3% 1_126del;995C>N;1204_2018del
6 human 83759 RBM4B RNA binding motif protein 4B XR_247213.3 51.2% 1_126del;995C>N;1204_2100del
7 human 5936 RBM4 RNA binding motif protein 4 NM_001198844.2 44% 38.6% (many diffs)
8 human 83759 RBM4B RNA binding motif protein 4B NM_001286135.2 39.3% 38.4% (many diffs)
9 human 5936 RBM4 RNA binding motif protein 4 NM_001198843.1 38.2% 38.4% (many diffs)
10 mouse 66704 Rbm4b RNA binding motif protein 4B NM_025717.3 90.3% 96.1% (many diffs)
11 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531823.3 90.3% 96.1% (many diffs)
12 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531824.3 90.3% 96.1% (many diffs)
13 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531825.3 90.3% 96.1% (many diffs)
14 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531826.2 90.3% 96.1% (many diffs)
15 mouse 19653 Rbm4 RNA binding motif protein 4 NM_001290122.1 84.9% 87.8% (many diffs)
16 mouse 19653 Rbm4 RNA binding motif protein 4 NM_001290123.1 84.9% 87.8% (many diffs)
17 mouse 19653 Rbm4 RNA binding motif protein 4 NM_009032.3 84.9% 87.8% (many diffs)
18 mouse 102902673 Gm21992 predicted gene 21992 NM_001290127.1 64.4% 66.4% (many diffs)
19 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531827.3 39.9% 38.9% (many diffs)
20 mouse 19653 Rbm4 RNA binding motif protein 4 NM_001290124.1 37.4% 38.9% (many diffs)
21 mouse 19653 Rbm4 RNA binding motif protein 4 NM_001290125.1 37.4% 38.9% (many diffs)
22 mouse 66704 Rbm4b RNA binding motif protein 4B XR_001782610.1 17% (many diffs)
23 mouse 66704 Rbm4b RNA binding motif protein 4B XR_001782611.1 12.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1143
ORF length:
1077
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GAAGCTGTTC ATCGGAAACC TTCCCCGGGA GGCTACAGAG CAGGAGATTC
121GCTCACTCTT CGAGCAGTAT GGGAAGGTGC TGGAATGTGA CATCATTAAG AATTACGGCT
181TTGTGCACAT AGAAGACAAG ACGGCAGCTG AGGATGCCAT ACGCAACCTG CACCATTACA
241AGCTTCATGG GGTGAACATC AACGTGGAAG CCAGCAAGAA TAAGAGCAAA GCTTCAACCA
301AGTTACACGT GGGTAACATC AGCCCCACTT GTACCAACCA AGAGCTTCGA GCCAAGTTTG
361AGGAGTATGG TCCGGTCATC GAATGTGACA TCGTGAAAGA TTATGCCTTC GTACACATGG
421AGCGGGCAGA GGATGCAGTG GAGGCCATCA GGGGCCTTGA CAACACAGAG TTTCAAGGCA
481AAAGAATGCA TGTGCAGTTG TCCACAAGCC GGCTTCGGAC TGCCCCTGGT ATGGGAGACC
541AGAGTGGCTG CTATCGGTGT GGGAAAGAAG GGCACTGGTC CAAAGAGTGC CCAGTAGATC
601GTACGGGTCG TGTGGCAGAC TTTACTGAGC AGTATAATGA ACAATATGGA GCAGTTCGAA
661CACCTTACAC CATGGGCTAC GGGGAATCCA TGTATTACAA CGATGCATAT GGAGCACTCG
721ACTACTATAA GCGATACCGG GTCCGCTCTT ATGAGGCAGT AGCAGCGGCG GCAGCGGCTT
781CTGCATACAA CTACGCAGAG CAGACCATGT CCCATCTGCC TCAAGTCCAA AGCACAACTG
841TGACCAGCCA CCTCAACTCT ACTTCTGTTG ATCCCTATGA CAGACACCTA TTGCCAAACT
901CTGGCGCTGC TGCCACTTCA GCTGCTATGG CTGNTGCTGC AGCCACCACT TCCTCCTACT
961ATGGAAGGGA CAGGAGCCCA CTGCGTCGTG CTGCAGCCAT GCTCCCCACA GTTGGAGAGG
1021GCTACGGTTA TGGGCCAGAG AGTGAATTAT CTCAGGCTTC CGCAGCTACA CGGAATTCTC
1081TGTATGACAT GGCCCGGTAT GAACGGGAGC AGTATGTGGA CCGAGCCCGG TACTCAGCCT
1141TTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1201gcaacgaac

Download FASTA (ORF) (Full)