Construct: ORF ccsbBroadEn_09132
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016429.1_s300c1, BRDN0000455427
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KRTAP9-3 (83900)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83900 | KRTAP9-3 | keratin associated protein 9-3 | NM_031962.3 | 99.7% | 100% | 99T>C |
| 2 | human | 83901 | KRTAP9-8 | keratin associated protein 9-8 | NM_031963.3 | 91% | 91.4% | (many diffs) |
| 3 | human | 81870 | KRTAP9-9 | keratin associated protein 9-9 | NM_030975.2 | 89.1% | 87.5% | (many diffs) |
| 4 | human | 100505724 | KRTAP9-7 | keratin associated protein 9-7 | NM_001277332.1 | 88.7% | 88.7% | (many diffs) |
| 5 | human | 83899 | KRTAP9-2 | keratin associated protein 9-2 | NM_031961.3 | 88.5% | 87.3% | (many diffs) |
| 6 | human | 85280 | KRTAP9-4 | keratin associated protein 9-4 | NM_033191.3 | 87.8% | 85.9% | (many diffs) |
| 7 | human | 81870 | KRTAP9-9 | keratin associated protein 9-9 | NM_001318227.1 | 86.6% | 85% | (many diffs) |
| 8 | human | 100507608 | KRTAP9-6 | keratin associated protein 9-6 | XM_003846481.1 | 85.8% | 84.4% | (many diffs) |
| 9 | human | 100507608 | KRTAP9-6 | keratin associated protein 9-6 | NM_001277331.1 | 78.9% | 75.8% | (many diffs) |
| 10 | human | 728318 | KRTAP9-1 | keratin associated protein 9-1 | NM_001190460.1 | 57.1% | 52% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 546
- ORF length:
- 477
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCCACTGT TGCTCCCCTT GCTGTCAGCC TACCTGCTGC AGGACCACCT 121 GCTGGCAGCC CACCACTGTG ACCACCTGCA GCAGCACACC CTGCTGCCAG CCCTCCTGCT 181 GTGTTTCCAG CTGCTGCCAG CCTTGCTGCC ACCCAACTTG CTGTCAAAAC ACCTGCTGTA 241 GGACCACCTG CTGCCAGCCC ATCTGTGTGA CCAGCTGCTG CCAGCCTTCC TGCTGTAGCA 301 CACCCTGCTG CCAGCCCACA TGCTGTGGGT CCAGCTGTGG TCAGAGCAGC TCCTGTGCAC 361 CTGTGTACTG CAGAAGAACC TGCTACCACC CCACAAGTGT TTGTCTGCCT GGTTGCCTAA 421 ACCAGAGCTG TGGCTCCAAC TGCTGCCAGC CCTGCTGCCG CCCAGCCTGC TGTGAGACCA 481 CCTGCTGCAG GACCACTTGT TTCCAGCCCA CCTGTGTGTA CAGCTGCTGC CAGCCTTCTT 541 GCTGCTTGCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt 601 gttgcaacga ac