Construct: ORF ccsbBroadEn_09154
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001838.1_s300c1, BRDN0000395454
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOXL4 (84171)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84171 | LOXL4 | lysyl oxidase like 4 | NM_032211.7 | 99.8% | 99.7% | 7T>A;843C>T;1214A>C |
| 2 | human | 84171 | LOXL4 | lysyl oxidase like 4 | XM_005270216.2 | 99.7% | 99.6% | (many diffs) |
| 3 | human | 84171 | LOXL4 | lysyl oxidase like 4 | XM_006718020.1 | 99.7% | 99.6% | (many diffs) |
| 4 | human | 84171 | LOXL4 | lysyl oxidase like 4 | XM_024448232.1 | 99.7% | 99.6% | (many diffs) |
| 5 | mouse | 67573 | Loxl4 | lysyl oxidase-like 4 | NM_053083.3 | 85.7% | 86.5% | (many diffs) |
| 6 | mouse | 67573 | Loxl4 | lysyl oxidase-like 4 | NM_001164311.1 | 85.5% | 86.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2334
- ORF length:
- 2268
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GAGGTCCCCA CCAGCCACCC TCTTTCTGTT CCTGCTGCTG CTAGGCCAGC 121 CCCCTCCCAG CAGGCCACAG TCACTGGGCA CCACTAAGCT CCGGCTGGTG GGCCCAGAGA 181 GCAAGCCAGA GGAGGGCCGC CTGGAGGTGC TGCACCAGGG CCAGTGGGGC ACCGTGTGTG 241 ATGACAACTT TGCTATCCAG GAGGCCACAG TGGCTTGCCG CCAGCTGGGC TTCGAAGCTG 301 CCTTGACCTG GGCCCACAGT GCCAAGTACG GCCAAGGGGA GGGACCCATC TGGCTGGACA 361 ATGTGCGCTG TGTGGGCACA GAGAGCTCCT TGGACCAGTG CGGGTCTAAT GGCTGGGGAG 421 TCAGTGACTG CAGTCACTCA GAAGACGTAG GGGTGATATG CCACCCCCGG CGCCATCGTG 481 GCTACCTTTC TGAAACTGTC TCCAATGCCC TTGGGCCCCA GGGCCGGCGG CTGGAGGAGG 541 TGCGGCTCAA GCCCATCCTT GCCAGTGCCA AGCAGCATAG CCCAGTGACC GAGGGAGCCG 601 TGGAGGTGAA GTATGAGGGC CACTGGCGGC AGGTGTGTGA CCAGGGCTGG ACCATGAACA 661 ACAGCAGGGT GGTGTGCGGG ATGCTGGGCT TCCCCAGCGA GGTGCCTGTC GACAGCCACT 721 ACTACAGGAA AGTCTGGGAT CTGAAGATGA GGGACCCTAA GTCTAGGCTG AAGAGCCTGA 781 CGAATAAGAA CTCCTTCTGG ATCCACCAGG TCACCTGCCT GGGGACAGAG CCCCACATGG 841 CCAACTGCCA GGTGCAGGTG GCTCCAGCCC GGGGCAAGCT GCGGCCAGCC TGCCCAGGTG 901 GCATGCATGC TGTGGTCAGC TGTGTGGCAG GGCCTCACTT CCGCCCACCG AAGACAAAGC 961 CACAACGCAA AGGGTCCTGG GCAGAGGAGC CGAGGGTGCG CCTGCGCTCC GGGGCCCAGG 1021 TGGGCGAGGG CCGGGTGGAA GTGCTCATGA ACCGCCAGTG GGGCACGGTC TGTGACCACA 1081 GGTGGAACCT CATCTCTGCC AGTGTCGTGT GTCGTCAGCT GGGCTTTGGC TCTGCTCGGG 1141 AGGCCCTCTT TGGGGCCCGG CTGGGCCAAG GGCTAGGGCC CATCCACCTG AGTGAGGTGC 1201 GCTGCAGGGG ATATGAGCGG ACCCTCAGCG ACTGCCCTGC CCTGGAAGGG TCCCAGAATG 1261 GTTGCCAACA TGAGAATGCT GCTGCTGTCA GGTGCAATGT CCCTAACATG GGCTTTCAGA 1321 ATCAGGTGCG CTTGGCTGGT GGGCGTATCC CTGAGGAGGG GCTATTGGAG GTGCAGGTGG 1381 AGGTGAACGG GGTCCCACGC TGGGGGAGCG TGTGCAGTGA AAACTGGGGG CTCACCGAAG 1441 CCATGGTGGC CTGCCGACAG CTCGGCCTGG GTTTTGCCAT CCATGCCTAC AAGGAAACCT 1501 GGTTCTGGTC GGGGACGCCA AGGGCCCAGG AGGTGGTGAT GAGTGGGGTG CGCTGCTCAG 1561 GCACAGAGCT GGCCCTGCAG CAGTGCCAGA GGCACGGGCC GGTGCACTGC TCCCACGGTG 1621 GCGGGCGCTT CCTGGCTGGA GTCTCCTGCA TGGACAGTGC ACCAGACCTG GTGATGAACG 1681 CCCAGCTAGT GCAGGAGACG GCCTACTTGG AGGACCGCCC GCTCAGCCAG CTGTATTGTG 1741 CCCACGAGGA GAACTGCCTC TCCAAGTCTG CGGATCACAT GGACTGGCCC TACGGATACC 1801 GCCGCCTATT GCGCTTCTCC ACACAGATCT ACAATCTGGG CCGGACTGAC TTTCGTCCAA 1861 AGACTGGACG CGATAGCTGG GTTTGGCACC AGTGCCACAG GCATTACCAC AGCATTGAGG 1921 TCTTCACCCA CTACGACCTC CTCACTCTCA ATGGCTCCAA GGTGGCTGAG GGGCACAAGG 1981 CCAGCTTCTG TCTGGAGGAC ACAAACTGCC CCACAGGACT GCAGCGGCGC TACGCATGTG 2041 CCAACTTTGG AGAACAGGGA GTGACTGTAG GCTGCTGGGA CACCTACCGG CATGACATTG 2101 ATTGCCAGTG GGTGGATATC ACAGATGTGG GCCCCGGGAA TTATATCTTC CAGGTGATTG 2161 TGAACCCCCA CTATGAAGTG GCAGAGTCAG ATTTCTCCAA CAATATGCTG CAGTGCCGCT 2221 GCAAGTATGA TGGGCACCGG GTCTGGCTGC ACAACTGCCA CACAGGGAAT TCATACCCAG 2281 CCAATGCAGA ACTCTCCCTG GAGCAGGAAC AGCGTCTCAG GAACAACCTC ATCTGCCCAA 2341 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac