Transcript: Human XM_005270216.2

PREDICTED: Homo sapiens lysyl oxidase like 4 (LOXL4), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOXL4 (84171)
Length:
3627
CDS:
123..2396

Additional Resources:

NCBI RefSeq record:
XM_005270216.2
NBCI Gene record:
LOXL4 (84171)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005270216.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000046203 CCTGACGAATAAGAACTCCTT pLKO.1 833 CDS 100% 2.640 3.696 N LOXL4 n/a
2 TRCN0000046205 CCCTAACATGGGCTTTCAGAA pLKO.1 1361 CDS 100% 4.950 3.960 N LOXL4 n/a
3 TRCN0000299634 CCCTAACATGGGCTTTCAGAA pLKO_005 1361 CDS 100% 4.950 3.960 N LOXL4 n/a
4 TRCN0000303740 TTGGACCAGTGCGGGTCTAAT pLKO_005 447 CDS 100% 13.200 9.240 N LOXL4 n/a
5 TRCN0000303741 TCACCAATCCAGATGGTATTG pLKO_005 2546 3UTR 100% 10.800 7.560 N LOXL4 n/a
6 TRCN0000046207 AGAGTCAGATTTCTCCAACAA pLKO.1 2243 CDS 100% 4.950 3.465 N LOXL4 n/a
7 TRCN0000299632 AGAGTCAGATTTCTCCAACAA pLKO_005 2243 CDS 100% 4.950 3.465 N LOXL4 n/a
8 TRCN0000046206 CAGGAAAGTCTGGGATCTGAA pLKO.1 782 CDS 100% 4.950 3.465 N LOXL4 n/a
9 TRCN0000299633 CAGGAAAGTCTGGGATCTGAA pLKO_005 782 CDS 100% 4.950 3.465 N LOXL4 n/a
10 TRCN0000046204 GAATTATATCTTCCAGGTGAT pLKO.1 2198 CDS 100% 4.050 2.835 N LOXL4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005270216.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09154 pDONR223 100% 99.7% 99.6% None (many diffs) n/a
2 ccsbBroad304_09154 pLX_304 0% 99.7% 99.6% V5 (many diffs) n/a
3 TRCN0000481341 AACTGTATACCACTCGCTCGTCGG pLX_317 20% 99.7% 99.6% V5 (many diffs) n/a
4 ccsbBroadEn_12788 pDONR223 100% 35% 35% None 1_1476del n/a
5 ccsbBroad304_12788 pLX_304 0% 35% 35% V5 1_1476del n/a
6 TRCN0000474433 TCCAATTATTAGAGTGCACCGCAG pLX_317 49.8% 35% 35% V5 1_1476del n/a
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