Construct: ORF ccsbBroadEn_09192
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004855.1_s300c1, BRDN0000393905
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- L3MBTL3 (84456)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | NM_001007102.4 | 99.9% | 99.8% | 473C>A;750T>C |
| 2 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | NM_001346550.1 | 99.9% | 99.8% | 473C>A;750T>C |
| 3 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | NM_001346551.1 | 99.9% | 99.8% | 473C>A;750T>C |
| 4 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | NM_032438.4 | 96.7% | 96.6% | 213_287del;548C>A;825T>C |
| 5 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | XM_005267161.4 | 96.7% | 96.6% | 213_287del;548C>A;825T>C |
| 6 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | XM_006715578.3 | 96.7% | 96.6% | 213_287del;548C>A;825T>C |
| 7 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | XM_011536179.3 | 96.7% | 96.6% | 213_287del;548C>A;825T>C |
| 8 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | XM_011536180.2 | 96.7% | 96.6% | 213_287del;548C>A;825T>C |
| 9 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | XM_011536181.2 | 96.7% | 96.6% | 213_287del;548C>A;825T>C |
| 10 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | XM_011536183.2 | 96.7% | 96.6% | 213_287del;548C>A;825T>C |
| 11 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | XM_011536184.2 | 96.7% | 96.6% | 213_287del;548C>A;825T>C |
| 12 | human | 84456 | L3MBTL3 | L3MBTL histone methyl-lysin... | XM_006715576.3 | 92.5% | 92.5% | 213_392del;653C>A;930T>C |
| 13 | mouse | 237339 | L3mbtl3 | l(3)mbt-like 3 (Drosophila) | NM_001347467.1 | 75.2% | 78.4% | (many diffs) |
| 14 | mouse | 237339 | L3mbtl3 | l(3)mbt-like 3 (Drosophila) | XM_006512735.3 | 75.2% | 78.4% | (many diffs) |
| 15 | mouse | 237339 | L3mbtl3 | l(3)mbt-like 3 (Drosophila) | NM_172787.3 | 73.1% | 76.2% | (many diffs) |
| 16 | mouse | 237339 | L3mbtl3 | l(3)mbt-like 3 (Drosophila) | XM_006512731.3 | 73.1% | 76.2% | (many diffs) |
| 17 | mouse | 237339 | L3mbtl3 | l(3)mbt-like 3 (Drosophila) | XM_006512732.3 | 73.1% | 76.2% | (many diffs) |
| 18 | mouse | 237339 | L3mbtl3 | l(3)mbt-like 3 (Drosophila) | XM_006512733.3 | 73.1% | 76.2% | (many diffs) |
| 19 | mouse | 237339 | L3mbtl3 | l(3)mbt-like 3 (Drosophila) | XM_017313935.1 | 70% | 72.6% | (many diffs) |
| 20 | mouse | 237339 | L3mbtl3 | l(3)mbt-like 3 (Drosophila) | XM_011243171.2 | 68% | 70.5% | (many diffs) |
| 21 | mouse | 237339 | L3mbtl3 | l(3)mbt-like 3 (Drosophila) | XM_011243172.2 | 68% | 70.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2331
- ORF length:
- 2265
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TGAATCTGCC TCTAGCACAA GTGGTCAAGA GTTTGATGTG TTCAGTGTTA 121 TGGACTGGAA AGATGGAGTG GGCACGTTAC CAGGAAGTGA CTTAAAGTTT CGGGTAAATG 181 AGTTTGGAGC CCTGGAAGTT ATTACAGATG AGAATGAGAT GGAAAATGTT AAAAAAGCAA 241 CTGCTACCAC CACTTGGATG GTACCAACTG CTCAAGAAGT CTTTTCAGAG AAGACTGGGA 301 TGCCTTTCAG GTTGAAGGAT CCAGTGAAAG TAGAAGGGCT TCAGTTCTGT GAGAACTGTT 361 GTCAGTATGG CAACGTAGAT GAGTGTCTTT CTGGAGGAAA CTATTGCAGC CAGAATTGTG 421 CTCGGCACAT CAAAGATAAA GATCAGAAGG AAGAAAGGGA CGTAGAAGAA GACAATGAGG 481 AAGAAGATCC TAAGTGTAGT CGGAAGAAAA AACCAAAATT ATCTCTGAAA GCTGACAACA 541 AGGAGGATGG AGAAGAGAGA GATGATGAAA TGGAGAACAA ACAAGATGTA AGAATCCTGA 601 GGGGTTCGCA GAGAGCACGG AGGAAAAGAC GAGGGGATTC GGCTGTACTA AAGCAGGGTT 661 TGCCTCCTAA AGGAAAGAAA GCGTGGTGCT GGGCATCCTA CCTGGAAGAG GAGAAAGCGG 721 TGGCAGTGCC GGCGAAGCTG TTCAAGGAGC ATCAATCCTT TCCATATAAC AAAAATGGAT 781 TCAAAGTTGG CATGAAATTA GAAGGCGTGG ATCCCGAGCA TCAGTCTGTG TACTGTGTCC 841 TCACCGTCGC GGAGGTTTGT GGATACCGGA TAAAGCTTCA CTTTGATGGG TATTCTGATT 901 GCTATGACTT CTGGGTGAAT GCAGACGCTC TGGATATCCA CCCAGTTGGG TGGTGTGAGA 961 AAACCGGCCA CAAACTCCAT CCTCCAAAAG GGTATAAAGA AGAAGAATTC AATTGGCAGA 1021 CCTATCTTAA GACATGTAAA GCTCAAGCTG CTCCTAAGTC ATTATTTGAA AATCAGAATA 1081 TAACAGTGAT CCCATCGGGC TTTCGAGTTG GTATGAAGCT TGAGGCAGTA GACAAAAAGA 1141 ATCCCTCATT CATCTGTGTT GCTACGGTAA CAGATATGGT GGACAATCGT TTCCTGGTAC 1201 ATTTTGACAA CTGGGATGAG AGCTATGACT ATTGGTGTGA AGCATCAAGT CCACATATTC 1261 ATCCAGTTGG TTGGTGTAAG GAACATAGAA GAACCCTTAT TACTCCACCA GGTTATCCAA 1321 ATGTGAAACA TTTTTCTTGG GATAAATACT TAGAAGAAAC CAATTCTTTA CCTGCTCCTG 1381 CAAGAGCTTT CAAAGTGAAA CCTCCTCATG GATTCCAGAA AAAAATGAAG CTTGAGGTTG 1441 TAGACAAAAG GAACCCTATG TTTATTAGAG TAGCAACTGT GGCAGACACA GATGATCACC 1501 GGGTAAAAGT TCACTTTGAT GGCTGGAACA ATTGCTATGA TTACTGGATA GATGCAGATT 1561 CTCCTGATAT TCACCCTGTA GGCTGGTGTT CAAAAACAGG ACATCCCCTT CAGCCTCCTT 1621 TGAGCCCCTT AGAATTAATG GAAGCTTCAG AACATGGTGG ATGCTCAACC CCGGGATGTA 1681 AAGGGATTGG CCATTTCAAG AGAGCGAGAC ATCTGGGCCC TCACAGTGCT GCCAACTGTC 1741 CCTATTCAGA AATCAATTTG AATAAAGACC GTATTTTTCC AGACCGCTTA AGTGGTGAGA 1801 TGCCTCCGGC TAGTCCGTCA TTTCCAAGAA ATAAAAGGAC AGATGCAAAT GAAAGCTCTT 1861 CTTCCCCTGA AATCAGAGAC CAGCATGCTG ATGATGTCAA AGAAGACTTT GAAGAGAGAA 1921 CAGAAAGTGA AATGAGAACA TCACATGAAG CCAGAGGTGC CCGGGAAGAA CCCACCGTCC 1981 AGCAGGCACA GCGTCGGTCA GCTGTCTTTC TGTCCTTTAA GTCCCCAATT CCATGTCTGC 2041 CCTTGCGCTG GGAGCAGCAA AGCAAACTTC TTCCAACTGT CGCAGGAATC CCTGCCAGTA 2101 AAGTTTCCAA ATGGAGCACA GACGAGGTGT CAGAATTTAT ACAGAGCTTA CCTGGGTGTG 2161 AAGAACATGG AAAGGTATTT AAAGATGAAC AAATTGATGG AGAAGCATTT CTACTTATGA 2221 CTCAAACAGA CATTGTTAAA ATTATGAGCA TTAAACTGGG CCCTGCTCTC AAAATTTTCA 2281 ATTCCATCCT GATGTTCAAA GCTGCAGAGA AGAATTCTCA CAATGAACTT TGCCCAACTT 2341 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac