Construct: ORF ccsbBroadEn_09216

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006261.1_s300c1, BRDN0000386400
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACCS (84680)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84680 ACCS 1-aminocyclopropane-1-carbo... NM_001127219.2 99.8% 99.8% 871C>T;1262C>T
2 human 84680 ACCS 1-aminocyclopropane-1-carbo... NM_032592.4 99.8% 99.8% 871C>T;1262C>T
3 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_024448718.1 85.3% 81% 871C>T;1253_1254ins154;1350_1425del
4 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_024448719.1 85.3% 81% 871C>T;1253_1254ins154;1350_1425del
5 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_005253170.3 83.1% 83% 1_303del;1174C>T;1565C>T
6 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_011520407.1 75.7% 75.6% 0_1ins363;508C>T;899C>T
7 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_024448720.1 75.7% 75.6% 0_1ins363;508C>T;899C>T
8 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_005253172.2 73.9% 72.2% (many diffs)
9 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_011520406.2 71.6% 68% (many diffs)
10 human 84680 ACCS 1-aminocyclopropane-1-carbo... XR_930915.2 65.3% (many diffs)
11 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_006718348.2 63.5% 59.6% (many diffs)
12 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_024448721.1 63.5% 59.6% (many diffs)
13 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_011520410.2 52.9% 52.8% 0_1ins705;166C>T;557C>T
14 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_024448723.1 52.9% 52.8% 0_1ins705;166C>T;557C>T
15 human 84680 ACCS 1-aminocyclopropane-1-carbo... XR_001748003.1 46.7% (many diffs)
16 human 84680 ACCS 1-aminocyclopropane-1-carbo... XR_001748004.1 42.6% (many diffs)
17 human 84680 ACCS 1-aminocyclopropane-1-carbo... XR_001748007.1 41.4% (many diffs)
18 human 84680 ACCS 1-aminocyclopropane-1-carbo... XR_001748006.1 41% (many diffs)
19 human 84680 ACCS 1-aminocyclopropane-1-carbo... XR_001748005.1 34.1% (many diffs)
20 human 84680 ACCS 1-aminocyclopropane-1-carbo... XM_017018421.1 33.5% 31.4% 1_303del;858_859ins44;909_910ins853
21 human 84680 ACCS 1-aminocyclopropane-1-carbo... XR_001748008.2 31.3% (many diffs)
22 human 84680 ACCS 1-aminocyclopropane-1-carbo... XR_001748009.1 27.4% (many diffs)
23 human 84680 ACCS 1-aminocyclopropane-1-carbo... XR_001748010.1 26.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1569
ORF length:
1503
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT CACCCTTCCT CAAAAGGACT TCAGGGCTCC CACCACCTGT CTGGGCCCCA
121CCTGCATGCA GGACCTGGGC AGTAGCCATG GGGAAGATCT GGAAGGAGAA TGCTCCAGAA
181AACTGGACCA GAAGCTGCCA GAGCTCCGTG GAGTGGGTGA TCCTGCCATG ATCTCCTCTG
241ATACCTCCTA CCTGTCCTCT AGAGGAAGAA TGATTAAATG GTTCTGGGAT TCAGCTGAGG
301AGGGCTACAG GACCTACCAC ATGGATGAGT ATGATGAGGA CAAGAACCCC AGTGGCATCA
361TTAACTTGGG CACCAGTGAG AACAAACTCT GCTTTGACCT GCTGTCCTGG CGGCTGAGTC
421AGCGCGACAT GCAGAGGGTG GAGCCATCCC TGCTGCAGTA TGCTGACTGG AGGGGACATC
481TGTTCCTCCG GGAGGAAGTG GCCAAGTTCC TGTCTTTCTA CTGCAAGAGC CCAGTACCCC
541TCAGACCAGA GAATGTGGTT GTCCTGAATG GTGGTGCCTC GCTCTTCTCT GCTCTGGCCA
601CGGTGCTGTG TGAGGCCGGG GAGGCTTTCC TGATCCCCAC CCCTTACTAT GGCGCTATCA
661CACAGCACGT GTGTCTCTAT GGCAACATCC GGCTGGCCTA TGTCTACCTG GACAGTGAGG
721TCACTGGGCT AGACACACGC CCCTTCCAGC TCACAGTGGA GAAGCTGGAG ATGGCCCTGA
781GAGAAGCTCA CTCTGAGGGT GTGAAGGTCA AAGGCCTCAT CCTCATCAGC CCCCAGAACC
841CTCTGGGTGA TGTATACTCC CCTGAAGAGC TACAGGAGTA CCTGGTATTT GCCAAGAGGC
901ACAGGCTGCA TGTGATTGTG GATGAGGTCT ACATGTTGTC CGTGTTTGAG AAGTCTGTTG
961GGTACCGCAG TGTCCTAAGC CTGGAAAGGC TCCCTGACCC CCAGAGGACC CATGTGATGT
1021GGGCAACCAG CAAGGACTTC GGGATGTCTG GGCTCCGCTT TGGCACGCTG TACACAGAAA
1081ACCAGGATGT GGCCACTGCC GTGGCTTCCC TCTGCCGCTA CCACGGCCTC AGTGGCTTGG
1141TCCAGTACCA GATGGCACAG CTGCTCCGGG ACCGTGACTG GATCAACCAG GTGTACCTGC
1201CGGAAAACCA TGCCCGGCTC AAGGCTGCCC ACACCTATGT CTCAGAAGAG CTTAGGGCAT
1261TGGGGATCCC CTTCTTGAGT CGTGGGGCTG GCTTCTTCAT CTGGGTTGAC TTGAGAAAGT
1321ACCTGCTCAA GGGCACCTTT GAGGAGGAAA TGCTGCTCTG GCGCCGCTTT TTGGACAACA
1381AGGTGCTGCT GTCCTTTGGC AAGGCCTTCG AGTGTAAAGA GCCTGGTTGG TTTCGCTTTG
1441TCTTCTCAGA CCAGGTCCAC CGGCTTTGCC TGGGGATGCA GAGGGTCCAG CAGGTGCTTG
1501CAGGCAAATC CCAAGTGGCA GAAGACCCCC GTCCCTCTCA GAGCCAGGAG CCAAGTGACC
1561AACGCAGGTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1621tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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