Construct: ORF ccsbBroadEn_09227
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014325.1_s300c1, BRDN0000391145
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF503 (84858)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84858 | ZNF503 | zinc finger protein 503 | NM_032772.6 | 99.9% | 99.8% | 66A>N |
| 2 | mouse | 218820 | Zfp503 | zinc finger protein 503 | NM_145459.3 | 88.9% | 95.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2004
- ORF length:
- 1938
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CACAGCGCCC TCGCTTTCTG CCCTAAGAAG CAGTAAGCAC AGCGGCGGCG 121 GCGGCGGCGG NGGCGGAGGC GGCGGTGCAG ACCCTGCCTG GACCAGCGCG CTCTCTGGAA 181 ATAGCTCCGG CCCCGGCCCA GGCTCGTCCC CGGCCGGCAG CACCAAGCCT TTTGTGCACG 241 CCGTGCCCCC CTCTGACCCC CTGCGCCAGG CCAACCGCCT GCCAATCAAG GTGCTGAAGA 301 TGCTGACGGC ACGAACTGGC CACATTTTGC ACCCCGAGTA CCTGCAGCCC CTGCCTTCCA 361 CGCCGGTCAG CCCCATCGAG CTCGATGCCA AGAAGAGCCC GCTGGCGCTG TTGGCGCAAA 421 CATGTTCGCA GATCGGGAAG CCCGACCCCT CGCCCTCCTC CAAACTCTCC TCGGTTGCCT 481 CCAACGGGGG CGGCGCGGGC GGTGCCGGCG GCGGTGCTGC GGGCGACAAG GACACCAAAT 541 CGGGCCCCCT GAAGCTGAGC GACATCGGCG TGGAGGACAA GTCGAGTTTC AAGCCGTACT 601 CCAAACCCGG CTCGGATAAG AAGGAGCCGG GAGGCGGCGG TGGAGGCGGT GGCGGTGGCG 661 GGGGCGGCGG CGGGGGTGTT TCGTCGGAGA AGTCGGGATT CCGGGTACCG AGCGCCACCT 721 GCCAGCCATT CACGCCCAGG ACAGGCAGCC CGAGCTCCAG CGCCTCGGCC TGCTCGCCGG 781 GAGGTATGCT GTCCTCGGCC GGGGGTGCCC CGGAGGGCAA GGACGACAAG AAAGACACCG 841 ACGTGGGCGG CGGTGGCAAG GGCACCGGGG GCGCCTCGGC CGAAGGGGGA CCCACGGGGC 901 TGGCACACGG CCGGATTAGC TGCGGCGGCG GGATTAATGT GGATGTGAAC CAGCATCCGG 961 ATGGGGGCCC GGGAGGCAAG GCTCTGGGCT CGGACTGCGG CGGTTCATCG GGCTCCAGCT 1021 CCGGCTCCGG CCCCAGCGCG CCCACCTCCT CCTCAGTGTT GGGCTCTGGG CTGGTGGCTC 1081 CCGTGTCACC CTACAAGCCG GGCCAGACAG TGTTCCCTCT GCCTCCCGCG GGTATGACCT 1141 ACCCAGGCAG CCTGGCCGGG GCCTACGCCG GCTACCCGCC CCAGTTCCTG CCACACGGCG 1201 TGGCACTTGA CCCCACCAAG CCGGGCAGCC TGGTGGGGGC GCAGCTGGCG GCGGCCGCGG 1261 CCGGGTCTCT GGGCTGCAGT AAGCCGGCCG GCTCCAGCCC TTTGGCCGGA GCGTCTCCGC 1321 CGTCCGTGAT GACAGCCAGT TTGTGCCGGG ACCCTTACTG CCTCAGCTAC CACTGCGCTA 1381 GCCACCTGGC AGGGGCGGCG GCCGCCAGCG CTTCTTGCGC ACATGATCCG GCTGCTGCGG 1441 CTGCGGCGCT GAAGTCCGGA TACCCGCTGG TGTACCCCAC GCACCCGCTG CACGGTGTGC 1501 ACTCCTCGCT AACGGCCGCC GCGGCTGCTG GCGCCACACC GCCCTCCCTG GCCGGCCACC 1561 CCCTCTACCC CTACGGCTTT ATGCTCCCTA ACGACCCACT CCCCCACATC TGCAACTGGG 1621 TGTCGGCCAA CGGGCCGTGC GACAAGCGCT TCGCCACGTC CGAAGAGCTG CTGAGCCACT 1681 TGCGGACCCA TACGGCATTT CCCGGGACAG ACAAACTGCT GTCGGGCTAC CCCAGCTCGT 1741 CGTCTCTGGC CAGCGCTGCC GCGGCCGCCA TGGCTTGCCA CATGCACATC CCCACCTCGG 1801 GCGCACCGGG CAGCCCTGGG ACGCTGGCGC TGCGCAGCCC CCACCACGCG CTGGGACTCA 1861 GCAGCCGCTA CCACCCCTAC TCCAAGAGCC CGCTTCCCAC GCCTGGCGCC CCCGTGCCGG 1921 TGCCCGCCGC CACCGGACCG TACTACTCCC CCTACGCCCT CTACGGACAG AGACTGACCA 1981 CCGCCTCGGC GCTGGGGTAT CAGTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 2041 agcattgctt atcaatttgt tgcaacgaac