Construct: ORF ccsbBroadEn_09232
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007702.1_s300c1, BRDN0000392769
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZC3H10 (84872)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84872 | ZC3H10 | zinc finger CCCH-type conta... | NM_001303124.2 | 99.9% | 99.7% | 4C>N |
| 2 | human | 84872 | ZC3H10 | zinc finger CCCH-type conta... | NM_001303125.2 | 99.9% | 99.7% | 4C>N |
| 3 | human | 84872 | ZC3H10 | zinc finger CCCH-type conta... | NM_032786.3 | 99.9% | 99.7% | 4C>N |
| 4 | mouse | 103284 | Zc3h10 | zinc finger CCCH type conta... | NM_134003.1 | 88.5% | 96.7% | (many diffs) |
| 5 | mouse | 103284 | Zc3h10 | zinc finger CCCH type conta... | XM_006513013.2 | 88.5% | 96.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1368
- ORF length:
- 1302
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGNC TGACCGGGAC AGCTATGCCA ACGGTACCGG GAGCAGCGGT GGAGGCCCTG 121 GAGGTGGTGG CAGCGAGGAG GCCAGTGGGG CAGGGGTAGG CAGTGGCGGG GCCAGCTCAG 181 ATGCCATCTG TAGAGACTTC TTGAGGAATG TGTGCAAGCG AGGCAAGCGT TGCCGATATC 241 GCCACCCAGA CATGAGCGAG GTGTCCAACT TGGGGGTGAG CAAAAACGAG TTCATCTTCT 301 GCCATGACTT CCAGAACAAG GAGTGTAGCC GCCCAAATTG CCGTTTCATC CATGGCTCCA 361 AGGAGGATGA GGATGGCTAT AAGAAGACAG GAGAGCTTCC CCCACGGCTG AGGCAGAAAG 421 TAGCAGCTGG CCTTGGCCTT TCACCGGCTG ACCTACCAAA TGGCAAGGAG GAGGTCCCTA 481 TCTGCCGTGA CTTTCTCAAG GGTGACTGTC AGAGAGGAGC CAAGTGCAAG TTCCGTCACC 541 TGCAACGGGA TTTTGAGTTT GATGCTCGGG GTGGAGGAGG CACTGGTGGG GGCTCAACAG 601 GCTCAGTCCT CCCAGGACGA CGTCATGATC TCTATGATAT CTATGACCTT CCTGACAGGG 661 GCTTTGAGGA CCATGAGCCA GGCCCAAAAC GCCGGCGAGG TGGATGCTGC CCCCCTGATG 721 GCCCTCATTT TGAGTCATAT GAATATAGTT TGGCTCCACC GCGAGGGGTG GAGTGCAGAC 781 TGCTAGAGGA GGAGAATGCC ATGCTCAGGA AGCGGGTAGA GGAGTTAAAG AAGCAGGTCA 841 GCAACCTGCT GGCCACCAAT GAGGTACTAC TGGAACAAAA TGCTCAGTTC CGCAATCAGG 901 CCAAGGTCAT AACCCTGAGC TCCACTGCAC CAGCGACTGA GCAGACTCTG GCCCCCACTG 961 TGGGCACTGT TGCCACTTTT AACCATGGCA TTGCCCAGAC TCACACTACT CTCAGCAGCC 1021 AGGCTCTACA GCCTCGTCCA GTGTCCCAGC AAGAACTGGT GGCCCCTGCT GGAGCTCCAG 1081 CTGCTCCCCC AACTAATGCT GCACCTCCTG CTGCTCCACC ACCCCCACCC CCACACTTGA 1141 CCCCAGAGAT CACGCCACTG TCAGCTGCCC TGGCTCAAAC AATTGCCCAG GGAATGGCAC 1201 CTCCACCTGT CTCCATGGCT CCTGTGGCTG TATCTGTGGC TCCTGTGGCC CCTGTGGCTG 1261 TATCGATGGC CCAACCCTTG GCAGGAATCA CAATGAGCCA CACCACCACT CCCATGGTGA 1321 CTTACCCTAT CGCTTCCCAG AGCATGCGCA TCACGGCCAT GCCACACTGC CCAACTTTCT 1381 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac