Construct: ORF ccsbBroadEn_09242
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011191.1_s300c1, BRDN0000389621
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FIBCD1 (84929)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84929 | FIBCD1 | fibrinogen C domain contain... | NM_001145106.1 | 99.9% | 99.7% | 235C>G |
| 2 | human | 84929 | FIBCD1 | fibrinogen C domain contain... | NM_032843.5 | 99.9% | 99.7% | 235C>G |
| 3 | mouse | 98970 | Fibcd1 | fibrinogen C domain contain... | NM_178887.4 | 85.6% | 90% | (many diffs) |
| 4 | mouse | 98970 | Fibcd1 | fibrinogen C domain contain... | XM_006498467.2 | 67.2% | 70.2% | (many diffs) |
| 5 | mouse | 98970 | Fibcd1 | fibrinogen C domain contain... | XM_006498468.3 | 55.2% | 61.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1449
- ORF length:
- 1383
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACTAAAAAG 61 TTGGCATGGT CAACGACCGG TGGAAGACCA TGGGCGGCGC TGCCCAACTT GAGGACCGGC 121 CGCGCGACAA GCCGCAGCGG CCGAGCTGCG GCTACGTGCT GTGCACCGTG CTGCTGGCCC 181 TGGCTGTGCT GCTGGCTGTA GCTGTCACCG GTGCCGTGCT CTTCCTGAAC CACGCCCACG 241 CGCCGGGCAC GGCGCCCCCA CCTGTCGTCA GCACTGGGGC TGCCAGCGCC AACAGCGCCG 301 TGGTCACTGT GGAAAGGGCG GACAGCTCGC ACCTCAGCAT CCTCATTGAC CCGCGCTGCC 361 CCGACCTCAC CGACAGCTTC GCACGCCTGG AGAGCGCCCA GGCCTCGGTG CTGCAGGCGC 421 TGACAGAGCA CCAGGCCCAG CCACGGCTGG TGGGCGACCA GGAGCAGGAG CTGCTGGACA 481 CGCTGGCCGA CCAGCTGCCC CGGCTGCTGG CCCGAGCCTC AGAGCTGCAG ACGGAGTGCA 541 TGGGGCTGCG GAAGGGGCAT GGCACGCTGG GCCAGGGCCT CAGCGCCCTG CAGAGTGAGC 601 AGGGCCGCCT CATCCAGCTT CTCTCTGAGA GCCAGGGCCA CATGGCTCAC CTGGTGAACT 661 CCGTCAGCGA CATCCTGGAT GCCCTGCAGA GGGACCGGGG GCTGGGCCGG CCCCGCAACA 721 AGGCCGACCT TCAGAGAGCG CCTGCCCGGG GAACCCGGCC CCGGGGCTGT GCCACTGGCT 781 CCCGGCCCCG AGACTGTCTG GACGTCCTCC TAAGCGGACA GCAGGACGAT GGCGTCTACT 841 CTGTCTTTCC CACCCACTAC CCGGCCGGCT TCCAGGTGTA CTGTGACATG CGCACGGACG 901 GCGGCGGCTG GACGGTGTTT CAGCGCCGGG AGGACGGCTC CGTGAACTTC TTCCGGGGCT 961 GGGATGCGTA CCGAGACGGC TTTGGCAGGC TCACCGGGGA GCACTGGCTA GGGCTCAAGA 1021 GGATCCACGC CCTGACCACA CAGGCTGCCT ACGAGCTGCA CGTGGACCTG GAGGACTTTG 1081 AGAATGGCAC GGCCTATGCC CGCTACGGGA GCTTCGGCGT GGGCTTGTTC TCCGTGGACC 1141 CTGAGGAAGA CGGGTACCCG CTCACCGTGG CTGACTATTC CGGCACTGCA GGCGACTCCC 1201 TCCTGAAGCA CAGCGGCATG AGGTTCACCA CCAAGGACCG TGACAGCGAC CATTCAGAGA 1261 ACAACTGTGC CGCCTTCTAC CGCGGTGCCT GGTGGTACCG CAACTGCCAC ACGTCCAACC 1321 TCAATGGGCA GTACCTGCGC GGTGCGCACG CCTCCTATGC CGACGGCGTG GAGTGGTCCT 1381 CCTGGACCGG CTGGCAGTAC TCACTCAAGT TCTCTGAGAT GAAGATCCGG CCGGTCCGGG 1441 AGGACCGCTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1501 tttgttgcaa cgaac