Construct: ORF ccsbBroadEn_09293
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007923.1_s300c1, BRDN0000397565
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM110B (90362)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90362 | FAM110B | family with sequence simila... | NM_147189.3 | 99.9% | 100% | 936C>T |
| 2 | human | 90362 | FAM110B | family with sequence simila... | XM_005251324.3 | 99.9% | 100% | 936C>T |
| 3 | human | 90362 | FAM110B | family with sequence simila... | XM_005251325.3 | 99.9% | 100% | 936C>T |
| 4 | human | 90362 | FAM110B | family with sequence simila... | XM_005251326.3 | 99.9% | 100% | 936C>T |
| 5 | human | 90362 | FAM110B | family with sequence simila... | XM_017013948.1 | 99.9% | 100% | 936C>T |
| 6 | mouse | 242297 | Fam110b | family with sequence simila... | NM_173426.2 | 88.5% | 95.1% | (many diffs) |
| 7 | mouse | 242297 | Fam110b | family with sequence simila... | XM_006537895.3 | 88.5% | 95.1% | (many diffs) |
| 8 | mouse | 242297 | Fam110b | family with sequence simila... | XM_006537896.3 | 88.5% | 95.1% | (many diffs) |
| 9 | mouse | 242297 | Fam110b | family with sequence simila... | XM_006537897.1 | 88.5% | 95.1% | (many diffs) |
| 10 | mouse | 242297 | Fam110b | family with sequence simila... | XM_006537898.3 | 88.5% | 95.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1176
- ORF length:
- 1110
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CACGGAGACC CTACAGACAG GTAGCATGGT GAAGCCGGTC AGCCCCGCGG 121 GCACCTTCAC CTCTGCTGTG CCCCTGCGCA TCCTGAACAA GGGGCCAGAC TACTTCCGCA 181 GGCAGGCCGA GCCCAACCCC AAGAGGCTCA GCGCCGTGGA GAGGCTGGAG GCCGACAAGG 241 CCAAGTACGT CAAGAGCCAG GAGGTGATCA ACGCCAAGCA GGAGCCCGTG AAGCCCGCCG 301 TGCTGGCCAA GCCCCCGGTG TGCCCGGCTG CCAAGCGCGC ACTGGGCAGC CCCACGCTCA 361 AAGTGTTCGG CAACCACGCC AAGACCGAGA GCGGCGTGCA GAGGGAGAAC CTGAAGCTGG 421 AGATCCTGAA GAACATCATC AATAGCTCCG AGGGCTCTAG CTCGGGCTCG GGGCACAAGC 481 ACAGCTCCCG CAACTGGCCG CCCCACCGGT CGGAAGCCAC TGACCTGCAC CGTCACTCCT 541 TCGCGGAGTC CCTGAAGGTC TACCCCACGC AGGGCCGCAG GAGCCCGCAG GAGGGCGGCT 601 CCCACGTGGG CAGGAGACTG CTGGAGCAGT CAGCCGAGTC CTTCCTCCAC GTGTCCCACA 661 GCTCTTCGGA CATCCGCAAG GTGACCAGCG TGAAGCCCCT CAAGGCCATC CCCTGCAGTA 721 GCTCTGCCCC TCCCCTGCCT CCCAAGCCCA AAATCGCAGC CATCGCCTCC ATGAAGTCCC 781 CCGAGGCCGA CCCTGTGGAA CCAGCTTGTG GAGTCAGCCG AAGACCCTCC CTCCAGCGGT 841 CTAAGTCAGA CTTGAGTGAC AGATATTTCC GAGTGGACGC GGACGTGGAG AGGTTCTTCA 901 ACTACTGTGG ACTGGACCCG GAAGAGCTGG AAAACCTGGG AATGGAAAAC TTTGCAAGGG 961 CTAATTCTGA CATAATATCC CTCAACTTCC GCAGCGCAAG TATGATCAGC TCAGACTGTG 1021 AACAGTCTCA GGACAGTAAC AGTGACCTTA GAAATGATGA CAGTGCCAAT GACCGCGTGC 1081 CGTATGGCAT TTCTGCCATC GAAAGAAATG CTAGAATCAT CAAGTGGTTA TATAGCATCA 1141 AACAAGCTAG AGAGTCACAG AAGGTCTCCC ATGTGTACCC AACTTTCTTG TACAAAGTtg 1201 gcattataag aaagcattgc ttatcaattt gttgcaacga ac